LOCUS BC042624 4680 bp mRNA linear HUM 02-JAN-2004
DEFINITION Homo sapiens synaptopodin, mRNA (cDNA clone IMAGE:5177952), partial
cds.
ACCESSION BC042624
VERSION BC042624.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4680)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4680)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (02-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 51 Row: o Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 6005797.
FEATURES Location/Qualifiers
source 1..4680
/db_xref="H-InvDB:HIT000097303"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5177952"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
BASE COUNT 1030 a 1443 c 1331 g 876 t
ORIGIN
1 gtcatctgtg gaggagaaaa gtcacatcca gctccttcat gttgctgccg atgtgggatt
61 ttcctggctt cgtcagccaa gcaattggct gcctttgccg gaggctttga gaaccaaggc
121 ttgaaggccg gcaggagcat ccagggggaa gcttggcttc agggaggacc tagcagacgt
181 tgggccggag cactagcctc acggagaagg atctgaaaga agccaaggcg cggagccagc
241 agattgcagc ccagctgacc acccctccca gctccaattc ccgtggcgtc cagctcttca
301 acaggcgccg gcagagggtg aacgagttca ccttggagag ccacggccag aggggacaga
361 agcccagcca ggagtccctc agagtgctcc cttcaagcct cccaggccat gcaccggggc
421 tcagcctgag ttccacctcg ctgccggagc caggccctcc acggcacccc agtccccaga
481 gccccgacag aggggtccct ggccacagca tggaggggta ctcagaggag gctagcttgc
541 tgcggcacct ggagaaggtg gccagtgagg aggaagaggt accactggtg gtttatctaa
601 aggagaatgc agcactgctg acagccaatg ggctgcacct gtcccaaaac cgagaggccc
661 agcagtcctc accggcccca cctccagctg aggtccacag cccagctgca gatgtcaacc
721 aaaaccttgc ctcgcccagt gccacgctca ccacaccaac ttctaacagc agccacaatc
781 cgccagccac cgatgtcaat cagaacccac cggcaactgt tgtcccacag agcctgccac
841 tttctagcat ccaacagaat tcctcagagg cccaactccc atctaatggc acagggcctg
901 cttccaaacc cagcaccctg tgtgctgatg ggcaacccca ggcaccggct gaggaggtga
961 gatgcagcac actcctaatt gacaaggtat caactccagc taccaccacc agcaccttct
1021 ccagagaagc tacgctcatc cccagctcca ggcccccagc ctcagatttc atgtccagct
1081 ccctgctcat tgacatccag cccaacaccc tggtggtgtc agcagatcaa gagatgtctg
1141 ggcgagcagc tgccaccacg cccaccaagg tctacagtga ggtccacttc acactggcca
1201 agcccccatc agtggtcaac aggacggcca ggccttttgg gatccaggcg ccagggggca
1261 ccagccagat ggagaggagc cccatgctag agagacgaca ttttggggag aaggccccgg
1321 ctccccagcc ccccagtttg ccagacagga gcccccggcc acagagacac ataatgtccc
1381 gcagccccat ggtggaaagg aggatgatgg ggcagcgaag cccggcctca gagagacgcc
1441 ccttggggaa cttcactgca ccccccacct acactgagac cttgtccaca gcccctctgg
1501 cttcctgggt gaggtctcct ccctcatatt ctgtcctgta tcccagctcc gaccccaagt
1561 cttctcatct gaagggccag gcggttcctg ccagcaagac gggcattctg gaggagtcga
1621 tggcccgccg gggcagccgc aaatccatgt ttactttcgt ggagaagccc aaggtgaccc
1681 cgaatccaga cttgctggat ctggtacaga cagcggatga gaagcggcgg cagagggacc
1741 agggggaggt aggcgtggag gaggagccct tcgcactggg ggccgaggcc tccaacttcc
1801 agcaggagcc agcacctcgt gacagggcca gccccgcggc ggcggaggag gtggtaccag
1861 agtgggcctc ctgcctcaag tcaccccgca tccaggccaa gccgaagccc aaacccaacc
1921 agaacctctc cgaggcctct gggaagggag ctgagctcta cgcccgccgc cagtcacgga
1981 tggagaaata tgtcatcgag tcttcaagcc acacgccaga gctggcccgc tgcccatcac
2041 ctaccatgtc cctgccttcc tcctggaaat accccactaa cgcccccggg gccttccgag
2101 tggcatcccg aagcccagcc cggaccccgc ctgcctccct ctaccatggc tacctgcctg
2161 agaacggggt cctgcgccca gagcccacca agcagccgcc ataccagctg cgcccctcgc
2221 tctttgtcct ctcacctatc aaggagcctg ccaaggtctc accaagagct gcctcgcccg
2281 ccaagcccag ctccttggac ctggtgccca acctgcccaa gggggctctc cctccatctc
2341 ctgccctgcc tcggccctcg cgctcctcac cgggcctcta cacctccccc ggccaggaca
2401 gcctgcagcc cactgccgtg agccctcctt acggcggtga catctccccc gtgtctccct
2461 ccagggcgtg gtctccccga gccaagcagg cccccaggcc ctccttctct acccggaacg
2521 ccgggatcga ggctcaggtg tggaagcctt ccttctgctt caagtaacga accccacggg
2581 ggtcccactg ccggtcaagt tcccctcctt gagggccaga tggagagcag atgtggcagg
2641 aaatggcaca gagctgagtg aggagaatgg ggagtccatg gttcaaggtc agatgcggcc
2701 accagctggc tttgtgacct tgggcgagtc gcctcccctc tctgagctga agccgcccct
2761 cccctactac aacaggggtc ggactccatg tctgagcggg gaggagggtc atggagagag
2821 aactgtctgg cagccctgat gcggtagagg ggcatcctct ggcctttgtg agctgtaggg
2881 atgcagagtc tgatgccagc gtcttgctgg gggagtggcc tagaagggga tcctaacagg
2941 gacttctgga gcagacagag cctgccagtg cctgtggagt cagccagccg agggtctgcc
3001 tcctcagctg ccccaggggg gcctccctcc tgaggctcaa gctcctggcg tctttcttcc
3061 tgttgctgga ttctcacctc catgggcctg tctcttctgc ctctgccttc tggacaccgt
3121 ttcctctccg ctgcttcaga gagctttgcc tcgcctccgc ctgcgctccc ctccagggtc
3181 cttctgctgg ctgcggactc ggcccaccac tgctgtctga cgcttttctt cctgccccct
3241 ctgaggcctg gctctgtttt agggagacca ctgggcccag gcctcagccc cagttctacc
3301 tggcttgctg tcaccgctct aggggtgggg gacgtcccag gggatcccca ggagaaggag
3361 agccctgtag ggggctgtgc agatgtgggt gtgccacagg gagggtggcc cctagccatg
3421 tatccattgg ctgttttggc ttcagattca accaagatct gcctgactaa aagaagccac
3481 ctcagcgcag tggaacgggg cccaggggga ggcaggagag gagggttccg gtcccatgtc
3541 accttctcat ttgctgtatg actttggccc actcacattc tctttgggcc tcagttttat
3601 catttataca aggagggctt ttctagctgt aacaatctgt gaggattgag aggataggtt
3661 ggtgctttga agaaaggcct tgtaagtgac aagacagtcc cctgggaaga aagagaaagg
3721 aaatgggcta ttgccaaagg acaggtggcg ttagatggct gtgagggtga cctggtgagg
3781 gaagggttgg aatgagctgc tgcaggaggc caagggatgc ctgggctggg ctgggctggg
3841 ctggcttagg ctcaggattg cctggggaca gtaggagcat ggcaggagct ggggcaggtg
3901 catagcagtg cagtgggaag ggacagagga gatcttagaa ttttgaggaa aatctgggac
3961 ttgagacctg gattctaaca gaccaactgc atgtgtgtct gtaggtctca gtttccacat
4021 tcatacagtg agggtgttaa gtcaggtagc tggagacttc ccatcgcctc tgacactttt
4081 ggaggtgata tgatacagcc cccgaccaaa ccaggctttg tggggggtga gagaatacag
4141 acacaagtgg caggattcag atggaagctt cgcaaggctg ggggccgagg accacccact
4201 tctctttccc agccctagtt ctgggttccc cagtggggca aggggtggtg gaggcagtgc
4261 ccatgctggg ctgagcctgc agtttttgtg agctctgggc ttgtctccat gggaacaggg
4321 gtgccttctt agtgagctca tttcacacag atcgaggggg tatgcgtggg ggagttgtga
4381 gtgagctcag ctccttcagg cctggcctct cccagaacag agtgaagccc ctgccctgga
4441 cccctgctcc cttctaccct tgagggccac caatggaaga gcccgccctt cattctgcag
4501 ctcctgcggc caggctgagc tctgccctca actttgtttt ctctcatgtt ctcaatacac
4561 tctgcctcaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
4621 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//