LOCUS BC042592 4424 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens solute carrier family 9, member 11, mRNA (cDNA clone
MGC:43026 IMAGE:4838901), complete cds.
ACCESSION BC042592
VERSION BC042592.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4424)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4424)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 72 Row: o Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31341818.
FEATURES Location/Qualifiers
source 1..4424
/db_xref="H-InvDB:HIT000052717"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:43026 IMAGE:4838901"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4424
/gene="SLC9A11"
/gene_synonym="MGC43026"
/gene_synonym="RP3-436N22.2"
/db_xref="GeneID:284525"
/db_xref="HGNC:HGNC:28664"
CDS 371..3745
/gene="SLC9A11"
/gene_synonym="MGC43026"
/gene_synonym="RP3-436N22.2"
/codon_start=1
/product="solute carrier family 9, member 11"
/protein_id="AAH42592.1"
/db_xref="GeneID:284525"
/db_xref="HGNC:HGNC:28664"
/translation="MSSYFWAQNESNRPDLLCGQPADYLVEEKHFTTLVCFIVVLGGL
LKMCLKNCEVIVLTILSLSGFVIGHMAYNSVEVHQIVYPLLRTSSFSLYSYFSPLIIF
MVALDVEFYTLKKMFWQVLLTGLISFSTASIIIGYVVIKFNKDSWDLQSCLLFSITLG
IIDPLRSVNSLKTIGISKIYIDLIRGESLIICSIASIFFGNFRGNRIHFSIFRDLHVG
IELSYDILGSIIFGYWCAKIIQCILADVFSNMLTNIILCFSMVYMTFYIVEFLGMSGT
LALAAVGLNLDSLTFKPKIELVITKFLRIFSSVYEHLIYAFFGIVIGCGELSHYEFHT
IPFIFILFTTVNLVRLLTILLVSPILMHSNYEYNWRWGVVITWSGIKGVFNLLWAPDV
YNLAERKVEVPQMFILYVQVISLLTMGINSYVMTQSARKLDLCVLSLPRQMILQNATQ
HIQEIVQNTITLFKTEKILTNVNWTLVEDKTRIEYIPFSHVSHNDMKTESTTDEALME
EARLHVAAIQMSSFEKQRNNGILEIEAARILIGAAKCYYSIQGKFMSIYDVSTYMRTR
SWLIKFKNVLTFLEYCIEKIHFIPPESNTFLTFIFHIVFSEEFEYTGQIINLIYIYPM
IIHLWPMARGLNVSALISINYYFMFLYVLESTLKIIILKRKYFQQCWNTLEFFILVIG
IIDIFCVYFVKLRPDNLALIQLTVIMGYLRIIRFLPLFKIIVPILIRIADVQIKKRLS
LMYSITKGYIKSQEDAKLLIKQIAVCESIYQKLCEILETNKQDAVKELVLMEHEGRDV
VIALKTKQAIRNVIAKALKNLTFLCSRGIIDKHEVIEINKVLLKKLKALNNFPKAIPP
PTPDIYLHNIIWLEGKDVLIDFFKERAKLACFDSGDTICKGGEMPQGIYLIISGMAIL
HSLSPTFGIESNQRCDRGSSDMFTEFCTTGDIIGELSCLLKREIEYTVICETSLQACF
ISLEDLYEGFDAFWPSLEYKIWLKLALSTAYQYFESSLIDEDLRFQNCVMFNQAYVET
LSSYSDMIIDNMTMKFVIIVYGSVIDTKTEEPYFAPCIIPTTCEQVQGTSDLSKLLII
QASELTQRNSNTNVMASVNTVFEQPGKNINGRQKMS"
BASE COUNT 1465 a 707 c 806 g 1446 t
ORIGIN
1 cataactgtg cattgttctt tgggattttg agagccttca tctcaatttc aactttaaag
61 cagcttaatc tttaaggaac atatctctga tctgggtaat ttgtagaact taatttgagg
121 gtcattacat gtgaggatag caggagttga agatgccaag gacctgaagg gctactggag
181 ggacaggtga agtgatttga agatgtagca ttttgaatct ctttctggcc catcctctgc
241 ttcacaccag aatcattgtg acctgtagac ctgcaaaaca aaggaccaaa ggttagcatg
301 cagaagtgaa agtgtcaata ataaccaaac cactccatca agttaggtct ggggaaaagc
361 agcagcaaaa atgagttctt acttctgggc acaaaatgaa agtaacagac ctgatttact
421 ctgcgggcag ccagctgact accttgttga agagaaacat ttcacaacgc ttgtatgctt
481 cattgttgtt ttgggagggc ttttgaagat gtgtttaaag aattgtgaag tcattgtttt
541 gacgattctt tctctatcag gattcgtgat aggacacatg gcctacaatt ctgttgaggt
601 gcaccaaatt gtctaccctc ttctaagaac atcaagtttt tcactttatt cttacttttc
661 acctttaatt atatttatgg ttgctttgga tgtagaattt tatacactca agaaaatgtt
721 ttggcaggtc ttgttaactg gattaattag cttttctaca gcaagcatca taattggata
781 tgtcgttata aaattcaata aagattcatg ggatttgcaa tcttgcctac tctttagcat
841 cacccttggc attatagatc ctcttcgttc tgtgaattca ctaaaaacta ttggcatttc
901 taaaatatac attgatctca ttagaggaga atcattgatc atttgtagca tcgcatcaat
961 tttttttgga aattttcggg gcaacagaat ccacttttct atttttagag atttacatgt
1021 aggcattgaa ctcagctatg acattttggg aagcataata tttggatatt ggtgtgcaaa
1081 aatcattcag tgtatattgg ctgacgtttt tagcaatatg ctgactaata tcattctctg
1141 cttttcaatg gtgtacatga ctttctatat tgtggaattt ttaggaatgt caggcactct
1201 tgccttagcc gctgtaggac tgaatttaga ttctttaact tttaaaccga agatcgaact
1261 tgtaattact aagttcttaa gaattttttc atctgtatat gaacatttaa tatatgcttt
1321 ctttggcatt gtgattggat gtggagaact cagccactat gaatttcaca ctataccttt
1381 catattcatt ttatttacaa cagtgaattt ggtaaggttg cttactattt tgttagtgag
1441 ccctattttg atgcattcaa attatgaata taattggcga tggggagttg taatcacgtg
1501 gtctggaatt aaaggagttt ttaatttact ctgggctcct gatgtttata atctcgctga
1561 acgaaaagtg gaagtaccac aaatgtttat actctatgta caagtaatat cattattgac
1621 aatgggaata aattcatacg tgatgactca gtcagccagg aagttagatt tgtgtgttct
1681 ttccctccca agacaaatga tcttgcaaaa tgccactcag cacatacagg agatagtaca
1741 gaacacaata actttattta aaacagaaaa aattttgaca aatgttaact ggaccttagt
1801 agaagataaa acgaggatcg aatacattcc tttttcccac gtttcacata atgatatgaa
1861 gacagaatcc acaacagatg aagctttaat ggaggaagcc agattgcatg tagctgcaat
1921 acaaatgagt agctttgaaa aacagcgtaa caatggaatt cttgaaatag aggcagcccg
1981 gatattaatt ggtgcagcaa aatgctatta ctccatccaa ggaaaattca tgagtattta
2041 tgatgtttca acttatatga gaactagaag ttggcttata aagtttaaaa atgttttaac
2101 tttcttggaa tattgtatag aaaagataca ttttattcca cctgagagta atacatttct
2161 gacttttata tttcacatag tattttctga agaatttgaa tatacaggac agattataaa
2221 tttgatatat atttatccta tgataataca tctgtggcca atggcaagag gtttaaatgt
2281 atcagcactg atatcaataa actactattt tatgttttta tatgtattag aatcaacatt
2341 gaagataata attttgaaaa ggaaatattt tcaacaatgt tggaatactt tggaattttt
2401 tatcctggtt attggaatca ttgatatctt ttgtgtatac tttgtgaaat tgagaccaga
2461 caacttggct cttatacagc ttacagtaat aatgggatat ttaagaataa ttaggtttct
2521 tcctctcttc aagataatag taccaatact gataagaatt gcagatgtgc agatcaaaaa
2581 gcgcctcagc ttgatgtata gtattacaaa aggctatatc aaaagtcaag aagatgccaa
2641 acttctaata aaacaaatag ctgtctgtga atcaatatat cagaaactat gtgaaatttt
2701 ggaaaccaac aaacaggatg ctgtcaaaga attagtactc atggagcatg agggtcgtga
2761 tgttgtcatt gctttgaaga ctaaacaggc aatccggaat gtgattgcta aagctctaaa
2821 aaatctcacc ttcctttgtt caagaggcat tattgataag catgaagtca ttgagataaa
2881 taaggtactt cttaaaaaat taaaagcact aaataacttt ccaaaggcaa tcccaccccc
2941 aactcctgac atataccttc acaacatcat ttggctggaa ggtaaagatg ttctcattga
3001 cttcttcaag gaaagagcca aacttgcctg ttttgactct ggagatacca tttgtaaagg
3061 aggtgaaatg ccacaaggaa tctacttaat tatttcagga atggcaattt tgcatagttt
3121 atctcctacc tttggaatag agagtaatca aaggtgtgat agagggtcca gtgacatgtt
3181 tacagagttc tgtactactg gggacataat tggagagcta agctgtctgc ttaagcgtga
3241 aattgaatat accgtcatct gtgaaactag tttacaggcc tgctttatct ccctggagga
3301 tttatatgaa ggctttgatg ccttctggcc atctctggaa tataaaatat ggctaaagct
3361 tgctctcagt actgcctatc agtattttga atcaagtctt attgatgagg acttaaggtt
3421 tcagaactgt gtgatgttca atcaagcata tgtggaaact ttatcaagct atagtgacat
3481 gattattgat aatatgacca tgaaatttgt tatcattgtg tatggcagtg taattgatac
3541 taagacagag gaaccatatt ttgcaccttg cattatacct acaacctgtg agcaggttca
3601 gggaacttct gatttaagca agctgctgat aatccaagca tctgagctta cccaaagaaa
3661 tagtaacacc aatgtcatgg cctcagtcaa cacggtcttt gaacaaccag gaaagaatat
3721 aaatggaaga caaaagatga gttgaaaact ggataccatt ttagaaaagg gtattaatga
3781 tacaaatatg atgtgtggag tcaggttaaa gaccaaacta ctttcctcgc tcaaatacta
3841 aaggattatc tgcaaggagt ttacttagaa gccactgaaa caggttactg ctgcatttag
3901 tttataagca atggatggac ttctgtaaaa cttcttaatt ttaagtagtt gcattatact
3961 tgggatgtta aaaaagtctt caggataata taaaatacac tgaaacatat gtcctaccaa
4021 atgaaaccct gtttccagct aagagcaaat tttaacatag tgcattataa aaagtgttgt
4081 ataactgata tgttactctc taaagcatag aacctgtaat tttcatttgt gaaattgtta
4141 taattagtgc ctccctaata ttttcccgag tatagctatt ctccccttcc cagtttggta
4201 aatattgaaa aacagaatta tattccacaa tcttagtaac tttcagtaag taagtaactt
4261 ttgctttcag tgaaatttag gagaaattaa tattctcata ttgcatagta ctgtttgatg
4321 tcacctttca ttttattttt aaaaatcaaa taaagttgag ttttatggtt gtctaaaaaa
4381 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa caaaaaaaaa aaaa
//