LOCUS BC042536 3712 bp mRNA linear HTC 27-OCT-2008
DEFINITION Homo sapiens retinal G protein coupled receptor, mRNA (cDNA clone
IMAGE:4941180), with apparent retained intron.
ACCESSION BC042536
VERSION BC042536.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3712)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3712)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 29 Row: p Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 61744450
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..3712
/db_xref="H-InvDB:HIT000097271"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4941180"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
BASE COUNT 905 a 909 c 862 g 1036 t
ORIGIN
1 gaggatggca gagaccagtg ccttgcccac cggcttcggg gagctcgagg tgctggctgt
61 ggggatggtg ctactggtgg aaggtgagcc aggcagaacc tggggtgcag cgggggccca
121 gtgggttctg aggacccagg ccaccagtgt ggagctggca aggagaggag aggtccccaa
181 acccagctgg gtgtccggtc ccattggctg ccttcccctc tgtgcccgga ctcggggggt
241 gttctgacaa ttgaacctgt gaggtgcagc acactgcccg ctgggagcag agaggaagcc
301 aggcaagggt cagggaggga gggactttga aaggggacat ctgcccagga gatgatcaag
361 agccaggctt taggactttt catgtccctc cagccaggag aaaatttaat ccactccttg
421 gaaatcctgc tgagaatccc acataagatc agtcccccaa aaggctctgg ggacagacag
481 ctctgcctcc tgctcttgtg tggctggaac caagtccctt cagctctctg ccctcaatgc
541 cttgacattc cgaatgggtg gttgtaaaga ttaaatggga taatgggtat aaagtgctag
601 cctaaataga ctctagggta tttaagttca ttcactccca tcctctccag ccccaccact
661 attttcactg tgtctactcc tatgagccca agcacttcac ctctggaggc aacctgggtc
721 tgcgaggtac ctacctcaac ctagaatccc taagatgctc gctgaggcca gagctagaga
781 cagtgtcaat cctgaatctg ggccagccca agctaaattg atggagaacg cagctttggt
841 tcaaagcaga cccagagaaa tcatcagcac gttttctcac ctaatgagaa ctgacaatgg
901 agaggaagtg acagtcatta gattggtcct gaaggctctg gacacgactg tctggtggcc
961 ccagcccgtg tctccctttc ctgagaaccc tacaatctgg catccttcca ggtcctcaaa
1021 catgccataa aattttacca ctttattttt tggaaggggt ttaaatttac atttttattt
1081 catgtttaat gactagaaat gtcattatat acacaatgct ttggttttta ttttatttaa
1141 aatatgtttt aaatttcaat agctttgggg atacaagtga tttttgttta catagatgaa
1201 ttacatcgtg gcaaatgcta ggactttagt gcactcatca cccaagtagc gtacattgtg
1261 cctcatttgt aggttttttt aatcccactc cctctcccac ccttcccctt ctgagtctcc
1321 agagtccatt gtgtcctctg aatgcctttg cgtactcacg gtttagctcc cacttgtaac
1381 tgagaacaaa cagcatttgg ttttccattc ctgagttact tcacttacaa taatggcctc
1441 cagctccatc caaattgctg taataagaca ttatttcatt cctttttaca gctattattc
1501 catgatgtat atatactaca ttttctttat ccattcattg gtcagtgggc acttacattg
1561 atttcgtatc tttgcaattg tgaattgtgc ctcggtaagc atagatgtgc atgtgtgttt
1621 ttggctggat taaatggcag atctactttt agttatttaa ggaatctcta tactgttttc
1681 catagaggtt gtattaattt acatattccc accagcagtg cataagcatt ccctttttac
1741 cacatccatg gcattgatct attgtttttt gactttttaa tgatggtcat tcttatagga
1801 gtaaggtggt atctcattgt accatagcat gtctttgcac atgctattcc ctcctggaat
1861 gctcttccat gcactgtcct gcaggtaagt gcttctcata gttttgaagg caggattttt
1921 tcctgttcct cactttagat aggggaagct gaggttcaga gagcttaagg agcagcaagc
1981 gaggcaacca agccaaaatt caaggtcggg tctctctgtt gccagagtac gcccccttca
2041 tgttcacttc catgcctggc gtcctgggca gctcccagct ctaacatcga ctcttctcct
2101 tggagcctct ctgactttgc tctacagtcc ttggagaagg cattttgaaa tccaaaaggc
2161 ctgaattcaa gttccagctc caccgcttac tagctgtgta cttagggcaa gttagctagt
2221 gtctctgagc ctcagtttcc cagctataaa tggagaagag agtatccaag taaagattga
2281 atgagatgac tcatataaag tgcttatcct ggtgcctggt gtgtgctaag tgcctggcag
2341 ctgtcagtga ttatgactgt tatagcatga agcatgctac cctatattga ttgtcttcct
2401 tgtctgtcca ggaggttgct gatgttccat ccaccccaca cacactgttc tgaccccagc
2461 tgggcctcag cagccccaat gccagccccc acccttcctt tcagctctct ccggtctcag
2521 cctcaatacc ctgaccatct tctctttctg caagaccccg gagctgcgga ctccctgcca
2581 cctactggtg ctgagcttgg ctcttgcgga cagtgggatc agcctgaatg ccctcgttgc
2641 agccacatcc agccttctcc ggtaccagcc ccctccccag tccacaggct ctggggtcct
2701 gcctggggcc tgacccctgg gccctgggca gccaggccaa gggcattttt actacttaca
2761 gaaaattggc caagggcaga gggtgggcag gctaaaatgg gctgaattcc agattgattc
2821 tgaagaacga cagctgattt ctggaagaca ggggttgctg aaacctgatg aaagagatgg
2881 taggctgtag agatcaatgg tgtgggttct gtaaccaagc aacctaggtt tgcattctgg
2941 cttcagcatt tctagttctg ggcttcttcc ataaatcgga tattatttcc taactcatat
3001 aggtggttgg aagtatttac ttctattatg tgtaaataac ttaaaataat gcttgatacc
3061 taggactcta cgtaagtgtt tgtgaacaca aatgggggcg ttatcaccac tactgcaccc
3121 gtatgtatct gggctcctgg agtggaggga caccgatgca gtgtggagag gataagaggc
3181 agggaggggc agtcataact agctagtgtc taatacctcc ttatacaaaa accagggtct
3241 tccatcacag cttcagaagg tgtttataaa attgttttct gaagcagact ggacattctc
3301 attctggttt tggacactac agacggaggc tggagccccc ccggatgtgc atgctcagtg
3361 ctgaccagcc tggggggtct gcatcagtga gaactcttcc tcccacagag aattgaagtt
3421 tccacctttg cttgcccttt taggctgggg aggcctggga tctcccctct gactttgcct
3481 tcatcttctg tgtgaccttg gcttcagtat ctttgcctct ttgaatgtca gtttccccac
3541 ctatcaaata caggcatgag ctctcctgtg acagagggat ctgatcacgc agagagagcc
3601 tatggcccaa ccatggtgca gtcaaagtca cccagcctgg gcaacggaat gagactccgc
3661 ctcaataaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
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