LOCUS BC042495 4007 bp mRNA linear HTC 25-NOV-2003
DEFINITION Homo sapiens synaptotagmin VII, mRNA (cDNA clone IMAGE:5197755),
with apparent retained intron.
ACCESSION BC042495
VERSION BC042495.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4007)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4007)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (02-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 50 Row: o Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..4007
/db_xref="H-InvDB:HIT000097255"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5197755"
/tissue_type="Brain, adult, 6 pooled whole brains"
/clone_lib="NIH_MGC_114"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
BASE COUNT 932 a 1186 c 1073 g 816 t
ORIGIN
1 ctggaacgag accttcctct ttgaaggttt tccctatgag aaggtggtgc agaggatcct
61 ctacctccaa gtcctggact atgaccgctt cagccgcaac gaccccattg gggaggtgtc
121 catccccctt aacaaggtgg acctgaccca gatgcagacc ttctggaagg atctgaagcc
181 atgcagcgat gggagtggga gccgagggga gctgctcttg tctctctgct acaacccctc
241 tgccaactcc atcatcgtga acatcatcaa agcccggaac ctcaaagcca tggacatcgg
301 gggcacatca gacccctacg tgaaggtatg gctgatgtac aaggacaagc gggtggagaa
361 gaagaagacg gtgacgatga agaggaacct gaaccccatc ttcaatgagt ccttcgcctt
421 cgatatcccc acggagaagc tgagggagac gaccatcatc atcactgtca tggacaagga
481 caagctcagc cgcaatgacg tcatcggcaa gatctacctg tcctggaaga gcgggccagg
541 ggaggtgaag cactggaagg acatgattgc ccgtccccgg cagcccgtgg cccagtggca
601 ccagctgaag gcctgagtgg ggccaaggga ggcccagggg gccgagggcc caggtcccca
661 tcatgccctc accactttat gcacaacgcc cggcctgagc cccctgccat agggagggga
721 ggaccctgag ggctcagcca gggaggggtc ccaggactca actgggcccc gtttctagga
781 agtaccagcc ccatccccca cagtccagct ccggggaagg ggctctggga ggcattttcc
841 tgctttgccc cttttcttcc tgacttacta atactaaaga agttggggga gctcgagagc
901 cagacggcca gacaggcaga cccctccaga ggcccgccag gtgggcatgg tcccccattt
961 tctttaaggc agcacctgga gtggagagag gccactccct ctccagcccc cgatgtggac
1021 ccggggaggg gaggctgagg cgtttggccc cggcctggcc aggagaggcc catccccagg
1081 gcagtttcag gtgccggctg ggccctgaat gtcgaggata gtatatagcc cgctcctggg
1141 tcctggagct gtggcccttt gtactcgtgt tgtgtccatt gtgtgtgtgc gtggggacag
1201 aggcctggaa atgcggagga ctatacagag aaggcaggtt ttgtgaaggc caggcagggt
1261 tggaggccgg gggtgtgaga ggagaggccc atagggctga gtggggtcgg gtgaggcaga
1321 ggtcagaaac agaagagctg cagttgctgg agctgggctg agaactgggc tgcctcctgc
1381 catccccccg tctcctcccc ttctcccctt ggtgcccccc tctgctcaga atctgaagta
1441 gttccctcct cagcaatttc atctcttgaa cactgactca caccttttag gcacctactg
1501 tgtgcatagc attccaccag gactcatctc ccttccttct cagggggtcc cgagccccga
1561 ctagctttgc cctaactcct tcatcaaaag accccccgcc agcttcccac acctcatacg
1621 cagccacatc tgccctattc tccatgcttt ccagcttgcc tgcccttcct catctctccc
1681 tgcctgtgca gacctccacc cttctttcct ccacccctcc atcccccaat gcttgtagac
1741 cttccattca ttccgtctca tcgtgcgtgg tctctgatcg tccatcacct gaccttctcc
1801 aggactgtct tctcaccctt ccccactccc tggtccccgg gagcagctcc ttctgcccga
1861 ctcactcaca gtgcagggaa aggaggcagg gaaaagacca ggattctgtg agttctgagg
1921 ttgccacaca caaagaagct gtggtttctc tgcctcggcc actgatgaga ctaaaactgg
1981 cttccccttg gagacggcag atttcaggct gatccctgct taagccctct catccccacg
2041 ctggtcctgg tattgataca agacccagct ggtgacaaag cctccaatcc tgggggtcca
2101 cgagcctggg cctgacattc ccagaactac cgccaggtgg cgccaggccc ccacagtctg
2161 tggccgtggt cttagccccc agttccactc tggatgggcc tgtgacaccc caaagagaag
2221 aaggggactc tggatagggt ccccacatcc agggcgtggg gagaccattg gcatttggga
2281 accattttcc ttcgaacggc ttccccttga gctgagcatt ctgcttgctg cagtagacgg
2341 gtcgcctttt gcccataccg aaattttctg aaattaaatc gcacaccccc accatttcct
2401 ctccctggga tctggaggaa catcatacat agtaggtgaa tcgttttgta gagtgaagaa
2461 tgctaatgta aagcaaatag tcacccacgt tccttgtaaa tccaaatgtt tctatattgt
2521 agctttgctt aaaatggggt cggccccaac tgcatcctcc tctttggcgg gctggggagc
2581 ggcccccagc cgggacggga gggcagcgac cccgaggcct cgtggacgtg ggagagagtg
2641 tggtgggaag tcttgagcgg aggaggggat ctgcccttct ccactcctct cttggatccg
2701 cctcggtttc ctgtcccccc accacccgcc tgccccgcgg aagaccgccc agtgagccag
2761 cccccacctt ccaggcgcct tcgccctggg gatccaacca acttgtatcg agtgggcggg
2821 gcaacggctc cccatttttc ccgagccccg cccacagagc tcttagccaa tcctatgcag
2881 agagcatctc ctggcagggg tctcttccca accagacccc acccaggcac attagcgacc
2941 aggcttgggc ttccccagcg ccccaccacc accacgtgca ggtggagctc tgggatgcta
3001 tgttggggcg gcaagcggtg ggccgagggc cgggtaggct agcacgggag gtaagggtgg
3061 tatgggatgg ggcgggggcg gtctagggca ataggagagc agagaatggg ggaacttgag
3121 ggtgggggga gggcaccgga gccttgccac catcccagga ctttgggcaa gtcacccgca
3181 ctccctgggc ctcggtttcc ccatctgtaa aatgatggta ataatacttc acctacctca
3241 taggggaggt tgtgaggcca ccatcacctg acctgggggt caaggcagga ggactccgaa
3301 ggtgctaccc gtgagcaaag tgtaattacc gaatcctgac tgcaaggccc acctgcccct
3361 cccccacaga gcctccagag ctagctgagg ccaacgcagg cccatccgtc tcttcactct
3421 gtcgcaggcc ctttcatggg cttcgtctgc catctttgtg ggtgccctag acttagtcct
3481 tatcttgtcc tggtttcctt tcttgtgacc atctccccat gaaagtgctg tacaaattcc
3541 acccgcccca ggacccccgc acctgccctc tggcaccaga tgccagggaa gggacagagg
3601 aaaacagcca caaacaagcc aggggggctc cccggagccc caggggtggg gattggtggc
3661 cactgtttgt atgttcttga gtgcaagtgt tttataaaaa ataaaacaaa aacccaccat
3721 cacaaaaaaa aaaattttgc agcgaagaga aatgaagaaa aactgaagaa aaaaaaaaaa
3781 caggaaaaaa agaaccatac aaaatttttc caccacacat accctctaag ccagcaagat
3841 ttcctctttg caaaatcata tttttgtggg aatgggccct gctttttgtg gcaaggcctg
3901 ttctgattaa taaaggatcg tgaaaaagta aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3961 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa
//