LOCUS BC042297 4626 bp mRNA linear HUM 12-OCT-2006
DEFINITION Homo sapiens upstream binding transcription factor, RNA polymerase
I, mRNA (cDNA clone MGC:48801 IMAGE:4509695), complete cds.
ACCESSION BC042297
VERSION BC042297.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4626)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4626)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 84 Row: c Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7657670.
FEATURES Location/Qualifiers
source 1..4626
/db_xref="H-InvDB:HIT000052682"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48801 IMAGE:4509695"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4626
/gene="UBTF"
/gene_synonym="NOR-90"
/gene_synonym="UBF"
/db_xref="GeneID:7343"
/db_xref="HGNC:HGNC:12511"
/db_xref="MIM:600673"
CDS 202..2385
/gene="UBTF"
/gene_synonym="NOR-90"
/gene_synonym="UBF"
/codon_start=1
/product="upstream binding transcription factor, RNA
polymerase I"
/protein_id="AAH42297.1"
/db_xref="GeneID:7343"
/db_xref="HGNC:HGNC:12511"
/db_xref="MIM:600673"
/translation="MNGEADCPTDLEMAAPKGQDRWSQEDMLTLLECMKNNLPSNDSS
KFKTTESHMDWEKVAFKDFSGDMCKLKWVEISNEVRKFRTLTELILDAQEHVKNPYKG
KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMK
YIQDFQREKQEFERNLARFREDHPDLIQNAKKSDIPEKPKTPQQLWYTHEKKVYLKVR
PDEIMRDYIQKHPELNISEEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAELM
ANMKDVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQ
RVLGEEKMLNINKKQATSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEER
PELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKPGGEREERGKLPESPKR
AEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYEREL
SEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKFSQELLSNGELNHLPLKERMVEIGSR
WQRISQSQKEHYKKLAEEQQKQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSMTKLRG
PNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESE
DGDENEEDDEDEDDDEDDDEDEDNESEGSSSSSSSSGDSSDSDSN"
BASE COUNT 1186 a 1188 c 1306 g 946 t
ORIGIN
1 ccacgcgtcc ggccatctcg ggctttgtct ggcgactcgc tgccccggcg tcggctgcag
61 cggagctgcg gctcgactgt tcggcccgcc gtgctcccag gtgcccccgg cctgcgctcc
121 catccacacg ctcgggtgag gtggctttga ccccgggttg cccggccagc acgaccgagg
181 aggtggctgg acagctggag gatgaacgga gaagccgact gccccacaga cctggaaatg
241 gccgccccca aaggccaaga ccgttggtcc caggaagaca tgctgacttt gctggaatgc
301 atgaagaaca accttccatc caatgacagc tccaagttca aaaccaccga atcacacatg
361 gactgggaaa aagtagcatt taaagacttt tctggagaca tgtgcaagct caaatgggtg
421 gagatttcta atgaggtgag gaagttccgt acattgacag aattgatcct cgatgctcag
481 gaacatgtta aaaatcctta caaaggcaaa aaactcaaga aacacccaga cttcccaaag
541 aagcccctga ccccttattt ccgcttcttc atggagaagc gggccaagta tgcgaaactc
601 caccctgaga tgagcaacct ggacctaacc aagattctgt ccaagaaata caaggagctt
661 ccggagaaga agaagatgaa atatattcag gacttccaga gagagaaaca ggagttcgag
721 cgaaacctgg cccgattcag ggaggatcac cccgacctaa tccagaatgc caagaaatcg
781 gacatcccag agaagcccaa aaccccccag cagctgtggt acacccacga gaagaaggtg
841 tatctcaaag tgcggccaga tgagatcatg agagactata tccagaagca cccagagctg
901 aacatcagtg aggagggtat caccaagtcc accctcacca aggccgaacg ccagctcaag
961 gacaagtttg acgggcgacc caccaagcca cctccgaaca gctactcgct gtactgcgca
1021 gagctcatgg ccaacatgaa ggacgtgccc agcacagagc gcatggtgct gtgcagccag
1081 cagtggaagc tgctgtccca gaaggagaag gacgcctatc acaagaagtg tgatcagaaa
1141 aagaaagatt acgaggtgga gctgctccgt ttcctcgaga gcctgcctga ggaggagcag
1201 cagcgggtct tgggggaaga gaagatgctg aacatcaaca agaagcaggc caccagcccc
1261 gcctccaaga agccagccca ggaagggggc aagggcggct ccgagaagcc caagcggccc
1321 gtgtcggcca tgttcatctt ctcggaggag aaacggcggc agctgcagga ggagcggcct
1381 gagctctccg agagcgagct gacccgcctg ctggcccgaa tgtggaacga cctgtctgag
1441 aagaagaagg ccaagtacaa ggcccgagag gcggcgctca aggctcagtc ggagaggaag
1501 cccggcgggg agcgcgagga acggggcaag ctgcccgagt cccccaaaag agctgaggag
1561 atctggcaac agagcgttat cggcgactac ctggcccgct tcaagaatga ccgggtgaag
1621 gccttgaaag ccatggaaat gacctggaat aacatggaaa agaaggagaa actgatgtgg
1681 attaagaagg cagccgaaga ccaaaagcga tatgagagag agctgagtga gatgcgggca
1741 cctccagctg ctacaaattc ttccaagaag atgaaattcc agggagaacc caagaagcct
1801 cccatgaacg gttaccagaa gttctcccag gagctgctgt ccaatgggga gctgaaccac
1861 ctgccgctga aggagcgcat ggtggagatc ggcagtcgct ggcagcgcat ctcccagagc
1921 cagaaggagc actacaaaaa gctggccgag gagcagcaaa agcagtacaa ggtgcacctg
1981 gacctctggg ttaagagcct gtctccccag gaccgtgcag catataaaga gtacatctcc
2041 aataaacgta agagcatgac caagctgcga ggcccaaacc ccaaatccag ccggactact
2101 ctgcagtcca agtcggagtc cgaggaggat gatgaagagg atgaggatga cgaggacgag
2161 gatgaagaag aggaagatga tgagaatggg gactcctctg aagatggcgg cgactcctct
2221 gagtccagca gcgaggacga gagcgaggat ggggatgaga atgaagagga tgacgaggac
2281 gaagacgacg acgaggatga cgatgaggat gaagataatg agtccgaggg cagcagctcc
2341 agctcctcct cctcagggga ctcctcagac tctgactcca actgaggctc agccccaccc
2401 cagggcagcc agggagagcc caggagctcc cctccccaac tgaccacctt tgtttctccc
2461 ccatgttctg tcccttgccc ccctggcctc ccccactttc tttctttctt taaaaaaaaa
2521 aaaaaatacg gtgggggtag ggggctggag gagcccaggc caggactctg cagcctcaga
2581 gacatcagcc cttgggggtc ctcctccagg gacagcaact atcagactaa gccagcaccg
2641 gaccagcctg gcccacccca cccacttctg cacttgcggt tccggcatgg acaatggacc
2701 ggagagtggg ggtggggggt cccaaagagt ttgatgaggc cctccacacc tgcggcccaa
2761 tccaaggtgg ggtggaagct tggggaagac ccattccttc ccagaggggc ctgccacctg
2821 gacccctgca ttggaactgg aggcagggaa catggggagg aggagggtcg gtgccttcaa
2881 gaaaacaggc actgccctgg tggccctctc ccctgccccc tgcaggaagg agctgcctgg
2941 acccgttcat gggggagggg gcagaagtgt tttttatata tgtgtatata ttttttttta
3001 agctctgagc tgtcaacgag acgtttccta ccgatctcgg ctgccgtctc tgttgtcatt
3061 tctgggagag ggagggttta ggggtagatt tggaaccttt taaaaatggt cttgatgtat
3121 gtggaagaga gtatgtgtat gtgtgttcct gtacatagca tgggtgcagc tgtggatgtg
3181 tgcaaaagag tgtgagtgtg tgtgtgtgtg tgtaaagggg tctgtcctag agcccacatc
3241 agtttgttgt gaatctggaa aaagggtcgg tgagggccgg gagatgttga ccctggtggg
3301 agcaggctga ggctgccccg ttctccacat cctctgtttt gcccagtctc tgattccatt
3361 agggggagtg tgctgaagcc attctcggat gcttcccaga ccaggctccc tctgccagag
3421 tcacatgcat ccgagctgct ggtctccatt gtccagcagg aaggcggaaa ggcaggcaag
3481 atggtgtgaa gcttaaagct tgtatttgat ggaaaaggtc tcccctgttc atctgagagg
3541 ccaagcctgg ccaccccagg ctcagaacct gggcttcaag aaatgtgctg ggagctccta
3601 acttacacat ccctccagcc ttccttgaat cctcccacca ccccctattt cctttaattt
3661 ctcaggtctg ctccctcctc ccccaacccc acagctgggc aagaagtctg caaaagctgc
3721 atctgcagct gtctctaact cttcccagcc atctcccgta ttttttggta ccttgattcc
3781 ttgactctta ataagccaag ccaccttatc tctgtagttc ttattttttt gttgactaaa
3841 tttggggggt tcttttttat ggtcatgtca ctgacctatt aaattggggc ttggtgcttt
3901 tccaccttcc ccctctgaat gaaagccaag gaatggggga agagcgggaa ctctgccgcg
3961 gaggtggagc aagaacggtg aagggccctg gtcccagaga ggctggtggg tccctctccc
4021 aaaggaaggc agacagtctc tgctttgcct tggaccttgg tgctgggggt ggggaggcct
4081 gggggggaca ctccccactc ccattcccct tcctttgtcc taatcctgga attaagtaca
4141 ggggtttata ggttctattt cttcccaaga gccctgcaaa gaaccccagt ttcctatttg
4201 gatgccccta cactgttgtg tttcagtgga atgtattttc atttaaaaac aactttgaat
4261 ggggcacttt ttctttcctg ttttaaaaat tgaaaaattc ttacagtaca aacaggactg
4321 tcagggtggg ggtgttggtg ctgtaagagg tcactcttga gtgcattttg gcactgggat
4381 gggatggctg gggtgggaag acccccatcc ccacccccaa cttcttttct aatatttaag
4441 gagtgttttg taggattcaa caaccaccac aacttgaatt tgtatcatgg gaggtgggag
4501 ggagtggctt agaggtgtct gcctatgctt aaagccaact gtggaagttt tgttttccct
4561 tttttgtata ataaagtgaa aaacaaaggt ttgaaaaaaa aaaaaaaaaa aaaaaaaaaa
4621 aaaaaa
//