LOCUS BC042173 2985 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ankyrin repeat domain 6, mRNA (cDNA clone MGC:52197
IMAGE:5454509), complete cds.
ACCESSION BC042173
VERSION BC042173.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2985)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2985)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 44 Row: j Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 55742856.
FEATURES Location/Qualifiers
source 1..2985
/db_xref="H-InvDB:HIT000052670"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:52197 IMAGE:5454509"
/tissue_type="Brain, astrocytoma, grade IV"
/clone_lib="NIH_MGC_98"
/lab_host="DH10B"
/note="Vector: pOTB7"
gene 1..2985
/gene="ANKRD6"
/db_xref="GeneID:22881"
/db_xref="HGNC:HGNC:17280"
CDS 307..2475
/gene="ANKRD6"
/codon_start=1
/product="ankyrin repeat domain 6"
/protein_id="AAH42173.1"
/db_xref="GeneID:22881"
/db_xref="HGNC:HGNC:17280"
/translation="MSQQDAVAALSERLLVAAYKGQTENVVQLINKGARVAVTKHGRT
PLHLAANKGHLPVVQILLKAGCDLDVQDDGDQTALHRATVVGNTEIIAALIHEGCALD
RQDKDGNTALHEASWHGFSQSAKLLVKAGANVLAKNKAGNTALHLACQNSHSQSTRVL
LLAGSRADLKNNAGDTCLHVAARYNHLSIIRLLLTAFCSVHEKNQAGDTALHVAAALN
HKKVAKILLEAGADTTIVNNAGQTPLETARYHNNPEVALLLTKAPQVLRFSRGRSLRK
KRERLKEERRAQSVPRDEVAQSKGSVSAGDTPSSEQAVARKEEAREEFLSASPEPRAK
DDRRRKSRPKVSAFSDPTPPADQQPGHQKNLHAHNHPKKRNRHRCSSPPPPHEFRAYQ
LYTLYRGKDGKVMQAPINGCRCEPLINKLENQLEATVEEIKAELGSVQDKMNTKLGQM
ENKTQHQMRVLDKLMVERLSAERTECLNRLQQHSDTEKHEGEKRQISLVDELKTWCML
KIQNLEQKLSGDSRACRAKSTPSTCVDQLVVTAGPAAASDSSPPVVRPKEKALNSTAT
QRLQQELSSSDCTGSRLRNVKVQTALLPMNEAARSDQQAGPCVNRGTQTKKSGKSGPT
RHRAQQPAASSTCGQPPPATGSEQTGPHIRDTSQALELTQYFFEAVSTQMEKWYERKI
EEARSQANQKAQQDKATLKEHIKSLEEELAKLRTRVQKEN"
BASE COUNT 845 a 769 c 778 g 593 t
ORIGIN
1 gcgctgcctg gcgcgcgggc ggctggaggc acggcgctgg gcggcgccga ggccctgggg
61 ccgccggagc cagcgggagc cagtccccgt cttcgcccct cgccccccac cgtgtcgccg
121 gccttggtcc ctgcggcgcg gacgtccggc gcgggagaga aaggtcccga agatggcata
181 ttcataaaga catcttctga tgattgtgaa catctttacc tctgggtgcc aggccgggcc
241 agtgacttcg tgttgagctg aaggaacttg tctaccgctt ccctgaaaac ctttctttcc
301 taattcatga gccagcaaga tgcggtcgct gcactttcag agcgccttct cgtagctgcg
361 tacaaaggcc aaacagagaa tgtggttcag ctcatcaaca agggcgccag ggtagcggtt
421 accaagcatg gccggactcc cctgcatctt gctgccaata agggccatct tcctgtggtc
481 cagatcttgc tgaaggctgg ctgcgacctt gatgtccagg atgatgggga ccagaccgcc
541 ttgcaccggg ccacagtggt ggggaacacg gagatcatcg cggcgctcat ccacgaaggg
601 tgtgccctgg acagacaaga caaggatggg aatacagcct tgcatgaagc atcctggcat
661 ggtttcagcc agtcagccaa gctgctcgtt aaagcaggag ccaacgtgct tgccaagaac
721 aaggcgggga acacagctct gcacctggcc tgccagaaca gccactccca gagcacgcgc
781 gtcctcctgc tggccgggtc ccgcgctgac ctcaaaaata atgcaggaga cacctgtttg
841 cacgttgctg cgcgctataa tcacttgtcc atcattaggc tcctcctcac tgctttctgt
901 tctgtccatg aaaagaacca ggctggagac acagcacttc atgttgctgc tgccctaaat
961 cacaagaagg tggccaaaat cttactggaa gccggagcag atacgaccat tgttaacaat
1021 gcaggccaga ctccgctgga gactgcccgc taccacaata acccggaagt tgctcttctc
1081 cttactaaag ctccccaggt cttgcgcttc agtcgtgggc gaagcctgag gaaaaagaga
1141 gagaggctca aggaagagag gagagcccag tctgtgccaa gagatgaggt ggcccaaagc
1201 aagggcagtg tctcagcagg agacaccccc agcagtgaac aggctgtggc cagaaaagaa
1261 gaagccagag aagagttcct gtcagcctcc ccagaaccca gagcaaagga tgacaggagg
1321 agaaagtcaa ggcccaaggt gtcagcgttt tctgacccca ccccaccagc cgaccaacag
1381 cctggacacc agaagaacct gcatgctcat aatcacccta aaaagaggaa caggcatcgg
1441 tgttcatccc cacccccacc ccatgagttc agggcgtatc agctctacac attgtaccgg
1501 ggcaaggatg ggaaagtgat gcaggcacca ataaatggtt gtcgatgtga acctctaatc
1561 aacaagctgg agaatcagtt ggaggctact gtggaggaga taaaagcaga gctgggatcg
1621 gttcaggaca aaatgaatac aaagctgggg cagatggaga ataagaccca gcaccaaatg
1681 cgtgttttgg acaagctgat ggttgagcga ctttctgcag agaggacgga gtgcctgaac
1741 cgcctgcaac agcactcaga cacagagaag catgaggggg agaaacgaca gatatccttg
1801 gtggatgaat taaaaacctg gtgcatgtta aagattcaga atctggagca gaagctttct
1861 ggagattcta gggcctgcag agctaaatcc acaccatcta cttgtgtgga ccaattagtg
1921 gtgactgcag gtccagcagc agcttccgac agctcccctc cagtggttag gcccaaagag
1981 aaggccctca actccactgc tacccagaga ctccagcagg agctgtcgtc ttctgactgt
2041 acaggctccc gactgagaaa cgtcaaggtc cagacagcct tgctacccat gaatgaggca
2101 gccagatctg atcagcaggc tgggccctgc gtcaacagag gcactcaaac taagaagtct
2161 gggaagagtg ggccaacaag gcatcgtgcc cagcaacccg cagccagcag cacctgtggg
2221 cagccgccac cagccacagg cagcgagcag actggccctc acattcggga cacctcccaa
2281 gctctggagc ttacccagta tttttttgag gctgtttcta cccagatgga aaagtggtat
2341 gaaaggaaga ttgaagaagc acgaagccaa gccaatcaga aagcccagca agataaggct
2401 acattgaagg aacacattaa aagtttagaa gaggaacttg ccaaactaag gactagggtg
2461 cagaaggaaa attagcacca ataaagagga aatatgaaag gattcttgaa gatttccagt
2521 tttgcaactg cataatagct atgcccaagg agtcaactat tgtatatatt gcagatttgc
2581 ctttttaaaa aaatcactaa ttctacaatg tgccagatac atgtttccta tgcccaggaa
2641 gttatgaaga cttcaacaat taaactgaaa ccaggggaag cttgcttagt tttgggtttc
2701 attataaact cttagcctca gtccaggtta atctgaagtt tgaaagctca gattaagcaa
2761 gccatgccaa gaaactggac gatgtgtaag cctagactct aaaattcaag atgtgtgaaa
2821 taatataagt caaaagcaag aaaaacgtaa tcccgtctga actcaagtag tcattcatat
2881 aaatttgaac acacctgctg tgcctagaca agtgtctttc tgtaagagct gtaactctga
2941 gatgtgctaa ataaaccctc tttctcaaaa aaaaaaaaaa aaaaa
//