LOCUS BC042110 1693 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens coiled-coil domain containing 78, mRNA (cDNA clone
MGC:50726 IMAGE:5177109), complete cds.
ACCESSION BC042110
VERSION BC042110.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1693)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1693)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 88 Row: c Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40255165.
FEATURES Location/Qualifiers
source 1..1693
/db_xref="H-InvDB:HIT000052649"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:50726 IMAGE:5177109"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1693
/gene="CCDC78"
/gene_synonym="FLJ34512"
/gene_synonym="JFP10"
/db_xref="GeneID:124093"
/db_xref="HGNC:HGNC:14153"
CDS 93..1409
/gene="CCDC78"
/gene_synonym="FLJ34512"
/gene_synonym="JFP10"
/codon_start=1
/product="coiled-coil domain containing 78"
/protein_id="AAH42110.1"
/db_xref="GeneID:124093"
/db_xref="HGNC:HGNC:14153"
/translation="MEHAATTGPRPGPPSRRVENVVLRAKDWLPGAPGGTAVWATSLE
AEVPPDLALNKEQQLQISKELVDIQITTHHLHEQHEAEIFQLKSEILRLESRVLELEL
RGDGTSQGCAVPVESDPRHPRAAAQELRHKAQVPGHSDDHRFQVQPKNTMNPENEQHR
LGSGLQGEVKWALEHQEARQQALVTRVATLGRQLQGAREEARAAGQRLATQAVVLCSC
QGQLRQAEAENARLQLQLKKLKDEYVLRLQHCARQAVEHADGAGQAPATTALRTFLEA
TLEDIRAAHRSREQQLARAARSYHKRLVDLSRRHEELLVAYRAPGNPQAIFDIASLDL
EPLPVPLVTDFSHREDQHGGPGALLSSPKKRPGGASQGGTSEPQGLDAASWAQIHQKL
RDFSRSTQSWNGSGHSCWSGPRWLKSNFLSYRSTWTSTWAGTSTKS"
BASE COUNT 462 a 498 c 523 g 210 t
ORIGIN
1 cgcacttagc agtgccagtg gcagcagcag ccatggggaa gccgggcgtg gaggcagcac
61 cgggctcgga gctggccagg gttccctagc ctatggagca cgcagccacc acaggcccca
121 ggcctggacc tccctctcgg cgggtggaga atgttgtgct acgagccaag gactggctgc
181 caggagctcc tgggggcacc gcagtgtggg ccaccagctt ggaagcagag gtcccaccag
241 atctagcgct caataaggag cagcagctgc agatctccaa ggagctggtc gacattcaga
301 tcacaaccca ccacctacat gagcagcatg aggctgaaat cttccagctg aagagtgaga
361 tccttcggct ggagagccgg gtactggagc tggagctgcg aggagatggc accagccagg
421 gctgtgcagt cccagtggag tctgacccca ggcatccccg ggcagcagcc caagagctca
481 gacacaaagc ccaggtgcct ggacactctg atgaccacag attccaggtg cagcccaaga
541 acaccatgaa ccccgagaat gagcagcaca ggctggggag cggcctgcag ggggaagtga
601 agtgggcgct ggagcatcag gaggcccggc agcaggcact ggtgacgcgt gtggcaaccc
661 tgggccggca gctgcaggga gcccgagagg aggccagggc agccgggcag cgactggcca
721 cacaggctgt ggtgctgtgc agctgccaag gccagctccg tcaggcagag gctgaaaatg
781 cccggctgca gctgcagctc aagaaactga aggatgagta cgtcctacgg ctgcaacact
841 gcgcccggca ggcagtggag cacgcagatg gtgcaggcca agcgccagcc accacggccc
901 tccggacatt cctggaggcg actctggagg acatccgggc agcgcaccgc agccgtgagc
961 agcagctggc ccgggctgcc cgcagctacc acaagaggct ggtggatctg agccgcaggc
1021 atgaagagct actggttgcc tacagggcac ctgggaaccc ccaagctatt tttgacatag
1081 ccagcttgga cctggaacca ttgcccgtgc ccctggtcac tgacttcagc catcgggagg
1141 accagcacgg cgggcctggg gcactgctct catccccaaa aaagagaccc ggtggagcct
1201 cccagggggg aacatcagag ccacagggcc tggacgctgc atcctgggcc cagatccacc
1261 agaagctccg ggacttctcc cgcagcaccc agagctggaa cgggagcggg cacagctgct
1321 ggtccgggcc acgatggctg aagagcaact ttctgagcta caggagtacg tggaccagca
1381 cctgggcagg tacaagcacg aaatcctgag gctgaggaag ctggcaggtg caggggaccc
1441 ctggaaagtg ggggctgtgc ctccagccaa gccccagcat ccaaggaccg gcagccacta
1501 ggccgtctcc caaggagcag agcagagcag agctcctcag ccagcacaga accctcccac
1561 ccagcccccc ataaaacatg agtcaggata gaacccaaaa aaaaaaaaaa aaaaaaaaaa
1621 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1681 aaaaaaaaaa aaa
//