LOCUS BC042013 2375 bp mRNA linear HUM 30-JUL-2005
DEFINITION Homo sapiens GTPase activating Rap/RanGAP domain-like 1, mRNA (cDNA
clone IMAGE:5311466), partial cds.
ACCESSION BC042013
VERSION BC042013.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2375)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2375)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 77 Row: o Column: 6.
FEATURES Location/Qualifiers
source 1..2375
/db_xref="H-InvDB:HIT000097050"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5311466"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene <1..2375
/gene="GARNL1"
/gene_synonym="DKFZp566D133"
/gene_synonym="DKFZp667F074"
/gene_synonym="GRIPE"
/gene_synonym="KIAA0884"
/gene_synonym="TULIP1"
/db_xref="GeneID:253959"
/db_xref="MIM:608884"
CDS <1..1070
/gene="GARNL1"
/gene_synonym="DKFZp566D133"
/gene_synonym="DKFZp667F074"
/gene_synonym="GRIPE"
/gene_synonym="KIAA0884"
/gene_synonym="TULIP1"
/codon_start=3
/product="GARNL1 protein"
/protein_id="AAH42013.1"
/db_xref="GeneID:253959"
/db_xref="MIM:608884"
/translation="NDVINAILKQHTEEKEFVEKHFNDLNMKAVEQDEPIPQKPQSAF
YYCRLLLSILGMNSWDKRRSFHLLKKNEKLLRELRNLDSRQCRETHKIAVFYVAEGQE
DKHSILTNTGGSQAYEDFVAGLGWEVNLTNHCGFMGGLQKNKSTGLTTPYFATSTVEV
IFHVSTRMPSDSDDSLTKKLRHLGNDEVHIVWSEHTRDYRRGIIPTEFGDVLIVIYPM
KNHMFSIQIMKKPEVPFFGPLFDGAIVNGKVLPIMVRATAINASRALKSLIPLYQNFY
EERARYLQTIVQHHLEPTTFEDFAAQVFSPAPYHHLPSDAVERNAVIVLFLPKPPLEN
IGHLKAPTQRFYPVKLPQQRR"
BASE COUNT 779 a 435 c 423 g 738 t
ORIGIN
1 aaaatgatgt tattaatgct atccttaagc aacatacaga agaaaaagaa tttgttgaga
61 agcactttaa tgacttaaac atgaaagctg tggaacaaga tgaaccaata cctcaaaaac
121 ctcagtcagc attttattat tgcagattgc ttcttagtat attgggaatg aactcctggg
181 acaaacggag gagctttcat ctcctgaaga aaaatgaaaa gctacttaga gaacttagga
241 acttggattc aaggcagtgc cgagagacac acaagattgc agtattttat gttgctgaag
301 gacaagaaga caaacactcc attctcacca atacaggagg aagtcaagca tatgaagatt
361 ttgtagctgg tcttggttgg gaggtaaatc ttacaaacca ttgtggtttt atgggaggac
421 tacaaaaaaa caaaagcact ggattgacca ctccatattt tgctacctct acagtagagg
481 taatatttca cgtgtcaaca agaatgcctt ctgattctga tgattctttg accaaaaaat
541 tgagacattt gggaaatgat gaagtgcaca ttgtttggtc agagcatact agagactaca
601 ggagaggaat tattcccaca gaatttggtg atgtccttat tgtaatatat ccaatgaaaa
661 atcacatgtt cagtattcag ataatgaaaa aaccagaggt tcccttcttt ggtccccttt
721 ttgatggtgc tattgtgaat ggaaaggttc tacccattat ggttagagca acagctataa
781 atgcaagccg tgctctgaaa tctctgattc cattgtatca aaacttctat gaggagagag
841 cacgatacct gcaaacaatt gtccagcacc acttagaacc aacaacattt gaagattttg
901 cagcacaggt tttttctcca gctccctacc accatttacc atctgatgcc gttgaaagaa
961 atgcagtgat agttctcttc ctcccaaaac ctccgctaga aaacattggc catctcaagg
1021 ctcctaccca gagattctac ccagtgaaac tcccacagca acgcaggtag atggggctga
1081 cctggcctct ccaatgtctc ctcgaactag caaaagccgc atgtccatga agctgcgtcg
1141 ttcctctggc tcagccaata aatcctaagg agacaagcag cccagcagtg atcagcagta
1201 gccaccttag cacgaacata gggttaaccc tttcaggcct tcatgtctgc cataacatgc
1261 atgtttcttc ctgtacattt atttgagaaa acactggatt taaataattt taaataattt
1321 gtagcttaat attaaagatt taagttattt attgtttcat tttttttccc acaatccaag
1381 ctgccatatt ttgagggcag ggggagtttt attctacacc ctttaccttc ctagataatt
1441 atgtctaagt agttttatct ttaatttcat ggttaactgt gagccaaaat acaattggac
1501 aattagtctc attatttatt gtgccccatt gcaactttat ggttcaataa atatataatt
1561 ttttacaaat gtaaaatttt acatttaagc atttgtaaag ttacagcaaa agatgtacct
1621 gttaatacac agaatgtgta cagattattt gttatgacaa taaaacactc aaaataaatg
1681 gtctttagca tctcaaattc caactgaaat cattttagta ttaactcttc ttcccaaagc
1741 aatgtctcat ttcttggctg tgcaggtgat gccatgttat atccgataac tagaaaaatc
1801 actgtgctga acttttatgt ttagcttcca agtatttttc taatgttttg catttcaagt
1861 ggtatcactg ttaaatgcca tttgttttca gattgtggcc ttttattatt ggctgctaga
1921 tcctggtgtt tctatgttct tttttaagca ccaaaaagaa gatggggaag aaaagaagga
1981 aaattttctg atataaatat gttgttcaaa ttatgagtat tatttaaaaa agaaaaagga
2041 acataaccca ggagtctaag ttaaatctaa tattgttaat actgaacttg caggtccagg
2101 ttggtataca ttccaccctc tagaagtatt ttcttacagt agataagctg ctcacatttt
2161 gttttgaatg ggcatctcct gaggaaatgt agcatgacat tggtactaac tgcatgtgta
2221 aatacatcat actggcaaac cgtaaaatat aaattatgta tcatcattca tgtagtatct
2281 ataatttgta acagtggggg ggaaagatga catggtattt aataatacaa taaaaatatt
2341 cttatcactt cctatcaaga aaaaaaaaaa aaaaa
//