LOCUS BC041904 2452 bp mRNA linear HTC 27-OCT-2008
DEFINITION Homo sapiens chromosome 20 open reading frame 71, mRNA (cDNA clone
IMAGE:5298945), with apparent retained intron.
ACCESSION BC041904
VERSION BC041904.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2452)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2452)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 77 Row: d Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 62526038
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..2452
/db_xref="H-InvDB:HIT000096945"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5298945"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
BASE COUNT 612 a 740 c 491 g 609 t
ORIGIN
1 ggggccctgg cctcctccca gggttccaca tgttgctctc ccaatgtgag caagccctgg
61 tggcagcgcc agggtccagt gcagcccctc cccacagcat gctgggggct aattctgatg
121 tcatctttct gcagaaaacc attagaccat ccctccagac tgccaccctc aaagccgtct
181 gcccaggccc catctgacac tcttgacatc tgcaggtccc agaccctatg atgtgtccac
241 tctggaggct cctcatcttc ctcgggttgc tggccttgcc cttggcacca cacaagcagc
301 cttggcctgg cctggcccaa gcccacagag acaacaaatc caccctggca agaagcttac
361 ccatctaatt ttctcttcaa ccaacattga ctctgatcta catcctgtat gttagctccg
421 tgctccagac tgaaatacag tgttgggtga actttcaacc agaatacccc actttgagca
481 gctgttgcct gccacaccct ctgcagttat tgctcagggc ctcataaagc acaacgcaga
541 aagccgaatt cagaacatcc actttgggga cagactgaat gcctcagcac aagtggcccc
601 agggctggtg ggctggctaa tcagcggcag gaaacaccag cagcagcaag agagcagcat
661 caacatcacc aacattcagc tggactgtgg tgggatccag atatcattcc ataaggagtg
721 gttctcggca aatatctcac ttgaatttga ccttgaattg agaccgtcct tcgataacaa
781 catcgtaaag atgtgtgcac atatgagcat cgttgtggag ttctggctgg agaaagacga
841 gtttggccgg agggatctgg tgataggcaa atgcgatgca gagcccagca gtgtccatgt
901 ggccatcctc actgagtaag accccagctg cccctcccca gagctgggcc tccttcctga
961 tgagccccag ctgcagggtc acttcctgac cgtctcctaa attagtccaa agcagatctc
1021 atccttcccc cgggatctgc tcctcctccc atgttcccat ccgtgatgac cctaccaccc
1081 tcccagaagc cagactcttc tccctcctca ctcctcaagc ccatcatcac aagttcccat
1141 caatgacttg ctagtagccc tcagcttctc tcttttatct ccatctccta ctccactacc
1201 tggagcacta caggaaactc acctggcttt ccctggcccg gatctcccct cctacactcc
1261 attcctcatc ctgcagcaga aataactttc taacacagaa atctggccat gcccaagccc
1321 ctgctccaaa gcctccagtg gttcccagtg ccctctgggt aaacagcaac tcccaaattt
1381 cactcaaggc cctgcttgtc ctctcccctg ccaacttttc agccctttgt cctccaccac
1441 acaccgtaca ttttcacacc actgtgcctt tgcacatgct gatcttcttg cctggaatgc
1501 ccgtcccatc ttctatgaag ctcctcctta tcactcattc attcatatat ttcccaaaaa
1561 cctactgtat gccagcacca cacctgatgc tagggataca gtggtgaaca agacacaaaa
1621 tacagcttta ataaagctcc atagactggc tgaccaagtc tttcaatttc aactgactgt
1681 aagtcccttg aaggcaagac ttgtgcctga tttatctctg taattccgga atgctgaaag
1741 caatgaagac ctcagtggat gtctgttcat ttattcatca gatattcatt gagtacctag
1801 attgtaccag acattcatgg gaggacggtg taagggaaag actctggaat ctggtgctct
1861 attgccatgt ttctaatata accagcactt attagctgtg tgaccttggg caaggtctga
1921 gctacccctt tgatgatcac tgacaatgat acttctggca tggggctgag tgaggactaa
1981 aagactgtgg aaagtatact caacacatac ctcctggctt taatattgcc tggattgctc
2041 tgttctgttc tgtgcctcta cctttctttc tagggctatc ccaccaaaga tgaatcagtt
2101 tctctacaac ctcaaagaga atctgcaaaa agttctccca cacatggtag aaagtcaggt
2161 atgtcctctg atcggtgaaa tcctcgggca gctggatgtg aaactgttga aaagcctcat
2221 agaacaggag gctgctcatg aaccaaccca ccatgaaacc agccaaccct ctgcatgcca
2281 ggctggagag tcccccagct gacttctgct gatcagaagg aaagtccaca tcttgcaacc
2341 ttaagtctcc cttagagtgg ggcttctgct accctaaaaa ctttacccca ggctctgtgg
2401 acataccatc ctctcctaca ataaactcta gctctgaaaa aaaaaaaaaa aa
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