LOCUS BC041893 2618 bp mRNA linear HUM 30-JUL-2005
DEFINITION Homo sapiens tetratricopeptide repeat domain 17, mRNA (cDNA clone
IMAGE:5298645), complete cds.
ACCESSION BC041893
VERSION BC041893.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2618)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2618)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 77 Row: a Column: 10
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2618
/db_xref="H-InvDB:HIT000096934"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5298645"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2618
/gene="TTC17"
/gene_synonym="FLJ10890"
/db_xref="GeneID:55761"
CDS 1231..1578
/gene="TTC17"
/gene_synonym="FLJ10890"
/codon_start=1
/product="TTC17 protein"
/protein_id="AAH41893.1"
/db_xref="GeneID:55761"
/translation="MITKNKNESSKPNFPFSPFSFFSQDVPLISLANILHNAKLWNDA
VIVATMAVEIAPHFAVNHFTLGNVYVAMEEFEKALVWYESTLKLQPEFVPAKNRIQTI
QCHLMLKKGRRSP"
BASE COUNT 770 a 547 c 523 g 778 t
ORIGIN
1 cctggtgacc tcttagactt gttttgctta tcctcttggc ttgagcttgc ttccaagcac
61 agagatagaa gcaaatttcc atttattcat gtacattggc cagttcctgg tccttgtctg
121 acttctactt tttccacaaa aaaaaaaaaa aaaaaaaaaa aaaaaccggc taaccctgtg
181 tgacaccaga cttttccaga agaccggtta ttgttatgat ggatgagaaa atacagtgtt
241 ttatcagcac atttgtattc atgtgttctg agttctgcat taatccagat cttatgcttt
301 ttaaagacat ggctggtgtc ttctttgttc gtcaaggcaa tgtatggaat gatggaagga
361 acacaggatt tattgtcagg cattgctgag ttttaaacac agctctacct cttactagct
421 ttgtgaattt gggcacctta ttgaacttca atgagctcat ctagagtcat gcattctatg
481 gctgtcacaa agatgggtcc tttctgtttc ttctgtgtct gctacagaac ccaatatggc
541 atgatacagg taacagttgc tcaagttaga catttaaagg gaatgatatt tgtgatgata
601 gcaatcttgc tacttgttcc atccatcatt ttgtactcta tactgttagg caatagggaa
661 gggctgaggc tctacctctg ggagtcagca aacttcccga aaagggcaag agaataaaac
721 acttggactc tggaggccag acagcctctg gtgcacctac ttaattctag cattgtagta
781 tgaaaacagc cacagaaata cgtagaggac tgggaatgat tgtgtcctaa taaaactttt
841 ttcaaaatag gcaggagact aggtttggcc tatgggccaa agtttgccaa cccgtaatga
901 tataatggtt cttgcagaaa ttattttggc tttctgacag catgactcta agtgtggtct
961 gtggacagta cacagacttt ttattagcag tctgcaatga gacaaggagc ttcaccagaa
1021 gaaaccaact acattattca gcagattgtt tacttcagct gacattttgt tgtgtttgtt
1081 ttcgaagcaa gacttcgcca atgaaagaag taattgattt atattctggt acaagcacct
1141 tatctatcac agaccagtag caaacagcac aaaagcactt tgagtggcac tgttctaatc
1201 attcaccagg aaacacagac tgtattcttt atgatcacca aaaacaagaa tgaaagctca
1261 aaacccaatt ttcccttctc accattctcc ttcttctccc aggatgtgcc cctgattagc
1321 ctggccaaca tcttgcacaa tgccaagctc tggaatgacg ccgtcatagt agccaccatg
1381 gcagtagaga tcgcaccaca ctttgctgtg aaccacttca ctctgggcaa tgtctacgtg
1441 gcaatggaag aatttgaaaa agcactggtg tggtatgaat ccacattgaa gcttcagccc
1501 gagtttgtcc cagccaagaa ccgaatccag accatccagt gtcacttaat gctgaagaag
1561 ggacggcgct ctccttagtg cacttcttcc ttctctcttt ctctttactc atgctctaaa
1621 aaaaaagaat aagaaaagaa accaatcatt gtcagtatct actattaatg atgtgtgtga
1681 aaataactaa gacttataac aggactttta catatgtggg aattggtttg tttttgtttt
1741 tacgtttctc ctttccccca accaacctca gaagaggcac cttcagaaac acacatttct
1801 taaaaggaaa gtgcagcttc aagatattgt gtaaatactg agccaagaca tttctggagc
1861 tgtgctctgt ctccaaaaac ctcaatgcct ttagggcttt tctcagtggt ccagctagcc
1921 ttctctttgg aggaggatga agccgcattg cacattctct gcttcctgtc gtagcctctg
1981 ttgtcaatgg aaatgcggaa gcccatctgg tgcccgtcag tgagaagcaa cgttctgcgc
2041 tctctccgtt agacctccat gctgtcccca gtcttgtcca ttccatgctg ctgtgttaca
2101 aactctcaga ggtagtttgc aggggaggaa ggggaatatg attttaaaaa caaaatattt
2161 acaacaacaa aaattcttag gatcacctga cctttgtaat gttatttatg ttggggaggg
2221 aggggggctg agaaggggaa atcagcagtg tgcaacatct ttataatttg tactttaatt
2281 acaaatcaca aggaaaccaa taagttgaaa tcctatataa caggtttata tatatagaat
2341 atgtatattt gaagccctct acagactgag tctatgtttt actaattctt tgttcactgt
2401 gttacccatc ttggaataag ttgtgaatgt cagctccctc tctctgaggc ctccagactt
2461 agctcctcag gagggtaatg agccaaggtt gagtgtttcc atacaatgct tttacctttg
2521 atcccaggag aatcagaaac tccaacattt tggaatcttc aagggcacat actgagaaaa
2581 aaaataaaat tgtttatgag cgaaaaaaaa aaaaaaaa
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