LOCUS BC041846 3686 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens cadherin 3, type 1, P-cadherin (placental), mRNA (cDNA
clone MGC:43574 IMAGE:5269523), complete cds.
ACCESSION BC041846
VERSION BC041846.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3686)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3686)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 74 Row: h Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 45269142.
FEATURES Location/Qualifiers
source 1..3686
/db_xref="H-InvDB:HIT000052627"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:43574 IMAGE:5269523"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3686
/gene="CDH3"
/gene_synonym="CDHP"
/gene_synonym="HJMD"
/gene_synonym="PCAD"
/db_xref="GeneID:1001"
/db_xref="HGNC:HGNC:1762"
/db_xref="MIM:114021"
CDS 545..3034
/gene="CDH3"
/gene_synonym="CDHP"
/gene_synonym="HJMD"
/gene_synonym="PCAD"
/codon_start=1
/product="cadherin 3, type 1, P-cadherin (placental)"
/protein_id="AAH41846.1"
/db_xref="GeneID:1001"
/db_xref="HGNC:HGNC:1762"
/db_xref="MIM:114021"
/translation="MGLPRGPLASLLLLQVCWLQCAASEPCRAVFREAEVTLEAGGAE
QEPGQALGKVFMGCPGQEPALFSTDNDDFTVRNGETVQERRSLKERNPLKIFPSKRIL
RRHKRDWVVAPISVPENGKGPFPQRLNQLKSNKDRDTKIFYSITGPGADSPPEGVFAV
EKETGWLLLNKPLDREEIAKYELFGHAVSENGASVEDPMNISIIVTDQNDHKPKFTQD
TFRGSVLEGVLPGTSVMQMTATDEDDAIYTYNGVVAYSIHSQEPKDPHDLMFTIHRST
GTISVISSGLDREKVPEYTLTIQATDMDGDGSTTTAVAVVEILDANDNAPMFDPQKYE
AHVPENAVGHEVQRLTVTDLDAPNSPAWRATYLIMGGDDGDHFTITTHPESNQGILTT
RKGLDFEAKNQHTLYVEVTNEAPFVLKLPTSTATIVVHVEDVNEAPVFVPPSKVVEVQ
EGIPTGEPVCVYTAEDPDKENQKISYRILRDPAGWLAMDPDSGQVTAVGTLDREDEQF
VRNNIYEVMVLAMDNGSPPTTGTGTLLLTLIDVNDHGPVPEPRQITICNQSPVRQVLN
ITDKDLSPHTSPFQAQLTDDSDIYWTAEVNEEGDTVVLSLKKFLKQDTYDVHLSLSDH
GNKEQLTVIRATVCDCHGHVETCPGPWKGGFILPVLGAVLALLFLLLVLLLLVRKKRK
IKEPLLLPEDDTRDNVFYYGEEGGGEEDQDYDITQLHRGLEARPEVVLRNDVAPTIIP
TPMYRPRPANPDEIGNFIIENLKAANTDPTAPPYDTLLVFDYEGSGSDAASLSSLTSS
ASDQDQDYDYLNEWGSRFKKLADMYGGGEDD"
BASE COUNT 854 a 1047 c 1028 g 757 t
ORIGIN
1 ggctagcgcg ggaggtggag aaagaggctt gggcggcccc gctgtagccg cgtgtgggag
61 gacgcacggg cctgcttcaa agctttggga taacagcgcc tccgggggat aatgaatgcg
121 gagcctccgt tttcagtcga cttcagatgt gtctccactt ttttccgctg tagccgcaag
181 gcaaggaaac atttctcttc ccgtactgag gaggctgagg agtgcactgg gtgttctttt
241 ctcctctaac ccagaactgc gagacagagg ctgagtccct gtaaagaaca gctccagaaa
301 agccaggaga gcgcaggagg gcatccggga ggccaggagg ggttcgctgg ggcctcaacc
361 gcacccacat cggtcccacc tgcgaggggg cgggacctcg tggcgctgga ccaatcagca
421 cccacctgcg ctcacctggc ctcctcccgc tggctcccgg gggctgcggt gctcaaaggg
481 gcaagagctg agcggaacac cggcccgccg tcgcggcagc tgcttcaccc ctctctctgc
541 agccatgggg ctccctcgtg gacctctcgc gtctctcctc cttctccagg tttgctggct
601 gcagtgcgcg gcctccgagc cgtgccgggc ggtcttcagg gaggctgaag tgaccttgga
661 ggcgggaggc gcggagcagg agcccggcca ggcgctgggg aaagtattca tgggctgccc
721 tgggcaagag ccagctctgt ttagcactga taatgatgac ttcactgtgc ggaatggcga
781 gacagtccag gaaagaaggt cactgaagga aaggaatcca ttgaagatct tcccatccaa
841 acgtatctta cgaagacaca agagagattg ggtggttgct ccaatatctg tccctgaaaa
901 tggcaagggt cccttccccc agagactgaa tcagctcaag tctaataaag atagagacac
961 caagattttc tacagcatca cggggccggg ggcagacagc ccccctgagg gtgtcttcgc
1021 tgtagagaag gagacaggct ggttgttgtt gaataagcca ctggaccggg aggagattgc
1081 caagtatgag ctctttggcc acgctgtgtc agagaatggt gcctcagtgg aggaccccat
1141 gaacatctcc atcatagtga ccgaccagaa tgaccacaag cccaagttta cccaggacac
1201 cttccgaggg agtgtcttag agggagtcct accaggtact tctgtgatgc agatgacagc
1261 cacagatgag gatgatgcca tctacaccta caatggggtg gttgcttact ccatccatag
1321 ccaagaacca aaggacccac acgacctcat gttcacaatt caccggagca caggcaccat
1381 cagcgtcatc tccagtggcc tggaccggga aaaagtccct gagtacacac tgaccatcca
1441 ggccacagac atggatgggg acggctccac caccacggca gtggcagtag tggagatcct
1501 tgatgccaat gacaatgctc ccatgtttga cccccagaag tacgaggccc atgtgcctga
1561 gaatgcagtg ggccatgagg tgcagaggct gacggtcact gatctggacg cccccaactc
1621 accagcgtgg cgtgccacct accttatcat gggcggtgac gacggggacc attttaccat
1681 caccacccac cctgagagca accagggcat cctgacaacc aggaagggtt tggattttga
1741 ggccaaaaac cagcacaccc tgtacgttga agtgaccaac gaggcccctt ttgtgctgaa
1801 gctcccaacc tccacagcca ccatagtggt ccacgtggag gatgtgaatg aggcacctgt
1861 gtttgtccca ccctccaaag tcgttgaggt ccaggagggc atccccactg gggagcctgt
1921 gtgtgtctac actgcagaag accctgacaa ggagaatcaa aagatcagct accgcatcct
1981 gagagaccca gcagggtggc tagccatgga cccagacagt gggcaggtca cagctgtggg
2041 caccctcgac cgtgaggatg agcagtttgt gaggaacaac atctatgaag tcatggtctt
2101 ggccatggac aatggaagcc ctcccaccac tggcacggga acccttctgc taacactgat
2161 tgatgtcaac gaccatggcc cagtccctga gccccgtcag atcaccatct gcaaccaaag
2221 ccctgtgcgc caggtgctga acatcacgga caaggacctg tctccccaca cctccccttt
2281 ccaggcccag ctcacagatg actcagacat ctactggacg gcagaggtca acgaggaagg
2341 tgacacagtg gtcttgtccc tgaagaagtt cctgaagcag gatacatatg acgtgcacct
2401 ttctctgtct gaccatggca acaaagagca gctgacggtg atcagggcca ctgtgtgcga
2461 ctgccatggc catgtcgaaa cctgccctgg accctggaaa ggaggtttca tcctccctgt
2521 gctgggggct gtcctggctc tgctgttcct cctgctggtg ctgcttttgt tggtgagaaa
2581 gaagcggaag atcaaggagc ccctcctact cccagaagat gacacccgtg acaacgtctt
2641 ctactatggc gaagaggggg gtggcgaaga ggaccaggac tatgacatca cccagctcca
2701 ccgaggtctg gaggccaggc cggaggtggt tctccgcaat gacgtggcac caaccatcat
2761 cccgacaccc atgtaccgtc ctaggccagc caacccagat gaaatcggca actttataat
2821 tgagaacctg aaggcggcta acacagaccc cacagccccg ccctacgaca ccctcttggt
2881 gttcgactat gagggcagcg gctccgacgc cgcgtccctg agctccctca cctcctccgc
2941 ctccgaccaa gaccaagatt acgattatct gaacgagtgg ggcagccgct tcaagaagct
3001 ggcagacatg tacggtggcg gggaggacga ctaggcggcc tgcctgcagg gctggggacc
3061 aaacgtcagg ccacagagca tctccaaggg gtctcagttc ccccttcagc tgaggacttc
3121 ggagcttgtc aggaagtggc cgtagcaact tggcggagac aggctatgag tctgacgtta
3181 gagtggttgc ttccttagcc tttcaggatg gaggaatgtg ggcagtttga cttcagcact
3241 gaaaacctct ccacctgggc cagggttgcc tcagaggcca agtttccaga agcctcttac
3301 ctgccgtaaa atgctcaacc ctgtgtcctg ggcctgggcc tgctgtgact gacctacagt
3361 ggactttctc tctggaatgg aaccttctta ggcctcctgg tgcaacttaa tttttttttt
3421 taatgctatc ttcaaaacgt tagagaaagt tcttcaaaag tgcagcccag agctgctggg
3481 cccactggcc gtcctgcatt tctggtttcc agaccccaat gcctcccatt cggatggatc
3541 tctgcgtttt tatactgagt gtgcctaggt tgccccttat tttttatttt ccctgttgcg
3601 ttgctataga tgaagggtga ggacaatcgt gtatatgtac tagaactttt ttattaaaga
3661 aacttttccc aaaaaaaaaa aaaaaa
//