LOCUS BC041785 3097 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 52, mRNA (cDNA
clone MGC:32662 IMAGE:4808288), complete cds.
ACCESSION BC041785
VERSION BC041785.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3097)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3097)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 41 Row: p Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38569504.
FEATURES Location/Qualifiers
source 1..3097
/db_xref="H-InvDB:HIT000052606"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:32662 IMAGE:4808288"
/tissue_type="Prostate, adenocarcinoma."
/clone_lib="NIH_MGC_60"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..3097
/gene="DDX52"
/gene_synonym="ROK1"
/db_xref="GeneID:11056"
/db_xref="HGNC:HGNC:20038"
CDS 27..1826
/gene="DDX52"
/gene_synonym="ROK1"
/codon_start=1
/product="DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
/protein_id="AAH41785.1"
/db_xref="GeneID:11056"
/db_xref="HGNC:HGNC:20038"
/translation="MDVHDLFRRLGAGAKFDTRRFSADAARFQIGKRKYDFDSSEVLQ
GLDFFGNKKSVPGVCGASQTHQKPQNGEKKEESLTERKREQSKKKRKTMTSEIASQEE
GATIQWMSSVEAKIEDKKVQRESKLTSGKLENLRKEKINFLRNKHKIHVQGTDLPDPI
ATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA
FSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK
KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQ
LASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLF
VGSETGKLLAVRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQ
RDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGN
KGKAITFFTEDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESI
STTPKCFLEKAKDKQKKVTGQNSKKKVALEDKS"
BASE COUNT 1057 a 570 c 621 g 849 t
ORIGIN
1 agaactgtgg cgctttctgg gtaaagatgg acgtccacga tctctttcgc cggctcggcg
61 cgggggccaa attcgacacg agacgcttct cggcagacgc agctcgattc cagataggaa
121 aaaggaaata tgactttgat tcttcggagg tgcttcaggg actggacttt tttggaaaca
181 agaagtctgt cccaggtgtg tgtggagcat cacaaacaca tcagaagccc caaaatggag
241 agaaaaaaga agagagccta actgaaagga agagggagca gagcaagaaa aaaaggaaga
301 cgatgacttc agaaattgct tcccaagaag aaggtgctac tatacagtgg atgtcatctg
361 tagaagcaaa gattgaagac aaaaaagttc agagagaaag taaactaact tccggaaagt
421 tggagaatct cagaaaagaa aagataaact tcttgcggaa taaacacaaa attcacgtcc
481 aaggaaccga tcttcctgac ccaattgcta catttcagca acttgaccag gaatataaaa
541 tcaattctcg actacttcag aacattctag atgcaggttt ccaaatgcct acgccaatcc
601 aaatgcaagc catcccagtt atgctgcatg gtcgggaact tctggcttct gctccaactg
661 gatctggaaa aacattagct tttagcattc ctattttaat gcagctgaaa caacccgcaa
721 ataaaggctt cagagccctg attatatcac caacacgaga acttgccagc cagattcaca
781 gagagttaat aaaaatttct gagggaacag gattcaggat acacatgatc cacaaagcag
841 cagtggcagc caagaaattt ggacctaaat catctaaaaa gtttgatatt cttgtgacta
901 ctccaaatcg actaatctat ttattaaagc aagatccccc cggaatcgac ctagcaagtg
961 ttgagtggct tgtagtagac gaatcagata aactgtttga agatggcaaa actgggttca
1021 gagaccagct ggcttccatt ttcctggcct gcacatccca caaggtccga agagctatgt
1081 tcagtgcaac ttttgcatat gatgttgaac agtggtgcaa actcaacctg gacaatgtca
1141 tcagtgtgtc cattggagca aggaattctg cagtagaaac tgtagaacaa gagcttctct
1201 ttgttggatc tgagaccgga aaacttctgg ccgtgagaga acttgttaaa aagggtttca
1261 atccacctgt tcttgttttt gttcagtcca ttgaaagggc taaagaactt tttcatgagc
1321 tcatatatga aggtattaat gtggatgtta ttcatgcaga gagaacacaa caacagagag
1381 ataacacagt ccacagtttc agagcaggaa aaatctgggt tctgatttgt acagccttgc
1441 tagcaagagg gattgatttt aaaggtgtga acttggtgat caactatgac tttccaacta
1501 gctcagtgga atatatccac aggataggtc gaactggaag agcagggaat aagggaaaag
1561 caattacatt tttcactgag gatgataagc cattattaag aagcgttgct aatgttatac
1621 agcaggctgg gtgtcctgta ccagaataca taaaaggttt tcagaaacta ctaagcaaac
1681 aaaagaaaaa gatgattaag aaaccattgg aaagggagag cattagtaca actccaaaat
1741 gtttcttaga aaaagctaag gataaacaga aaaaggtcac tggtcagaac agcaagaaga
1801 aagtagctct tgaagacaaa agttaaaaac agactttaaa aatactgtcc cagaaatgta
1861 attttatgat cccagcatga atgttatttt catggaatac ttgaagtctt acagtcacct
1921 gtaccaaaca tttgaaatca actacaagta catgggactg gtgataaatg atcctaaact
1981 atcaagtcag tttcaatttg taggtgcctt ttttttttcc tgtagagatg agggtcttgc
2041 catgttgtcc aggctggtct tgaactcctg acctcacaca atcctcctgc cttagcctcc
2101 tgagtaactg agattacagg cacaagctgc tgcacccagc tctgtaggtg acttttaaat
2161 gattatacaa tggaaataac attcattgac atttctgtgg tttgaatcca gagagatact
2221 tcttatagaa aaacaaatgt ttatgctaaa aataacacca aaatgtggtg aactcttaag
2281 gacttttccc ttcaagtgtg aaggaaggtg tgatgaatgc tgtggagagg catctggaac
2341 agaaattcaa aataaagcct tgacattaaa taccccttcc actgctcact ttgtggatgg
2401 tagcatgagc tgtctaccaa gaagaaacct gctgctctct taattttaat atttcctaat
2461 ttgttgatgg ccttttgtgt tgtgaaccac aacaaagaga ggcctctttt gtggctggtt
2521 attccagttc cctgggattt taaattcttt ggtctattaa gtatccttgt attggatacg
2581 taatacctta gtgctgtcat aatgttgtac aagatcatga tcagcttctc cctttcttca
2641 ttttctgtga tttaaccatg ttctttcctg tctctttcca tttaagatat tttatttgaa
2701 tactgataaa cattttatcc tgataaggaa gaatgttctt gttacttgat atacctctgt
2761 cttcattctc ttacagctta tctttcctta ggttgatggt gcctcattta ataagtagat
2821 ctctacttaa gctaaaggat tatgatcata tggtgttgga gactattagc tattagattt
2881 ttctcaaaat atgagttttg tacaatggaa tgaaaaagtg acttcatata cgtaagactg
2941 gtgcctaaga atgacttgaa tgttatcagt actaccacag aactataata tacattgcct
3001 tttctcagca aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3061 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa
//