LOCUS BC041595 3546 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived), mRNA (cDNA clone MGC:52223 IMAGE:5443230), complete cds. ACCESSION BC041595 VERSION BC041595.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3546) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3546) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 44 Row: i Column: 24. FEATURES Location/Qualifiers source 1..3546 /db_xref="H-InvDB:HIT000096781" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:52223 IMAGE:5443230" /tissue_type="Brain, astrocytoma, grade IV" /clone_lib="NIH_MGC_98" /lab_host="DH10B" /note="Vector: pOTB7" gene 1..3546 /gene="FARP1" /gene_synonym="CDEP" /gene_synonym="MGC87400" /gene_synonym="PLEKHC2" /db_xref="GeneID:10160" /db_xref="HGNC:HGNC:3591" /db_xref="MIM:602654" CDS 266..3403 /gene="FARP1" /gene_synonym="CDEP" /gene_synonym="MGC87400" /gene_synonym="PLEKHC2" /codon_start=1 /product="FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)" /protein_id="AAH41595.1" /db_xref="GeneID:10160" /db_xref="HGNC:HGNC:3591" /db_xref="MIM:602654" /translation="MGEIEQRPTPGSRLGAPENSGISTLERGQKPPPTPSGKLVSIKI QMLDDTQEAFEVPQRAPGKVLLDAVCNHLNLVEGDYFGLEFPDHKKITVWLDLLKPIV KQIRRPKHVVVKFVVKFFPPDHTQLQEELTRYLFALQVKQDLAQGRLTCNDTSAALLI SHIVQSEIGDFDEALDREHLAKNKYIPQQDALEDKIVEFHHNHIGQTPAESDFQLLEI ARRLEMYGIRLHPAKDREGTKINLAVANTGILVFQGFTKINAFNWAKVRKLSFKRKRF LIKLRPDANSAYQDTLEFLMASRDFCKSFWKICVEHHAFFRLFEEPKPKPKPVLFSRG SSFRFSGRTQKQVLDYVKEGGHKKVQFERKHSKIHSIRSLASQPTELNSEVLEQSQQS TSLTFGEGAESPGGQSCRRGKEPKVSAGEPGSHPSPAPRRSPAGNKQADGAASAPTEE EEEVVKDRTQQSKPQPPQPSTGSLTGSPHLSELSVNSQGGVAPANVTLSPNLSPDTKQ ASPLISPLLNDQACPRTDDEDEGRRKRFPTDKAYFIAKEVSTTERTYLKDLEVITSWF QSTVSKEDAMPEALKSLIFPNFEPLHKFHTNFLKEIEQRLALWEGRSNAQIRDYQRIG DVMLKNIQGMKHLAAHLWKHSEALEALENGIKSSRRLENFCRDFELQKVCYLPLNTFL LRPLHRLMHYKQVLERLCKHHPPSHADFRDCRAALAEITEMVAQLHGTMIKMENFQKL HELKKDLIGIDNLVVPGREFIRLGSLSKLSGKGLQQRMFFLFNDVLLYTSRGLTASNQ FKVHGQLPLYGMTIEESEDEWGVPHCLTLRGQRQSIIVAASSRSEMEKWVEDIQMAID LAEKSSSPAPEFLASSPPDNKSPDEATAADQESEDDLSASRTSLERQAPHRGNTMVHV CWHRNTSVSMVDFSIAVENQLSGNLLRKFKNSNGWQKLWVVFTNFCLFFYKSHQDNHP LASLPLLGYSLTIPSESENIQKDYVFKLHFKSHVYYFRAESEYTFERWMEVIRSATSS ASRPHVLSHKESLVY" BASE COUNT 879 a 1015 c 969 g 683 t ORIGIN 1 gcgacccgga gcccgctccc cacccacccc gcctgctccg ccctcccctc cgccccgcgc 61 cacctttgat ggctcggacc tcagccggcc accgccagcc ctgctcgcgc gcccgcgccg 121 ccgccgtccg cgggtattaa tagccggcgc cgccgcgccc tcggccgccg ggggcttggg 181 agccgccgat cccggagccc gagccgggag agggagccgc cgcagccgcc ggcgctgtgg 241 agatattctc taagccgctt tcatcatggg agaaatagag cagaggccga ccccaggatc 301 acgactgggg gccccggaaa attcggggat cagtaccttg gaacgtggac agaagccgcc 361 cccaacacct tcaggaaaac tcgtgtccat caaaatccag atgctggatg acacccagga 421 ggcatttgaa gttccacaaa gagctcctgg gaaggtgctg ctggatgcag tttgcaacca 481 cctcaacctc gtggaaggtg actattttgg cctcgagttt cctgatcaca aaaagatcac 541 ggtgtggctg gatctcctaa aacccattgt gaaacagatt agaaggccaa agcacgttgt 601 tgttaagttt gtggtgaaat tctttccgcc tgaccacaca caactccaag aagaactcac 661 aaggtacctg ttcgcgctgc aggtgaagca ggacttggct caaggcaggt tgacgtgtaa 721 tgacaccagc gcagctctct tgatttcaca cattgtgcaa tctgagattg gggattttga 781 tgaagccttg gacagagagc acttagcaaa aaataaatac atacctcagc aagacgcact 841 agaggacaaa atcgtggaat ttcaccataa ccacattgga caaacaccag cagaatcaga 901 tttccagctc ctagagattg cccgtcggct agagatgtat ggaatccggt tgcacccggc 961 caaggacagg gaaggcacga agatcaatct ggccgttgcc aacacgggaa ttctagtgtt 1021 tcagggtttc actaagatca atgccttcaa ctgggccaag gtgcggaagc tgagcttcaa 1081 gaggaagcgc tttctcatca agctccggcc agatgccaat agtgcgtacc aggatacctt 1141 ggaattcctg atggccagtc gggatttctg caagtccttc tggaaaatct gtgttgaaca 1201 tcatgccttc tttagacttt ttgaagagcc caaaccaaag cccaagcccg tcctctttag 1261 ccgggggtca tcatttcggt tcagtggtcg gactcagaag caggttctcg actatgttaa 1321 agaaggagga cataagaagg tgcagtttga aaggaagcac agcaagattc attctatccg 1381 gagccttgct tcacagccta cagaactgaa ttcggaagtg ctggagcagt ctcagcagag 1441 caccagcctt acatttggag aaggtgccga atctccaggg ggccagagct gccggcgagg 1501 aaaggaaccg aaggtttccg ccggggagcc ggggtcgcac ccgagccctg cgccgaggag 1561 aagccccgcg ggtaacaagc aggcggacgg agccgcctcg gcgcccacgg aggaagagga 1621 ggaggtcgtt aaggatagga cccagcagag taaacctcag cccccgcagc caagcacagg 1681 ctccctgact ggcagtcctc acctttccga gctgtctgtg aactcgcagg ggggagtggc 1741 ccctgccaac gtgaccttgt ctcccaacct gagccccgac accaagcagg cctctccctt 1801 gatcagcccg ctgctgaatg accaggcctg cccccggacg gacgatgagg atgagggccg 1861 gaggaagaga ttcccaactg ataaagcgta cttcatagct aaggaagtgt ctaccaccga 1921 gcgaacatat ctgaaggatc tcgaagttat cacttcgtgg tttcagagca cagtgagcaa 1981 agaggacgcc atgccggaag cactgaaaag tctcatattc ccgaattttg aacctttgca 2041 caaatttcat actaattttc tcaaggaaat tgagcaacga cttgccctgt gggaaggccg 2101 ctcaaatgcc caaatcagag attaccaaag aatcggcgat gtcatgctga agaacattca 2161 gggcatgaag cacctggcgg ctcacctgtg gaagcacagc gaggccttgg aggccctgga 2221 gaatggaatc aagagctccc ggcggctgga gaacttctgc agagactttg agctgcagaa 2281 ggtgtgttac ctaccgctca acaccttcct cctgcggcca ctgcaccggc tcatgcacta 2341 caagcaggtc ctggagcggc tgtgcaaaca ccacccgccg agccacgccg acttcaggga 2401 ctgccgagcc gctttggcag agatcacgga gatggtggca cagctccacg gtacgatgat 2461 caagatggag aatttccaga agctgcacga actcaagaaa gatttgattg gcattgacaa 2521 tcttgtggtt ccgggaaggg agttcatccg tctgggcagc ctcagcaagc tctcggggaa 2581 ggggctccag cagcgcatgt tcttcctgtt caacgacgtc ctgctataca cgagccgggg 2641 gctgacggcc tccaatcagt ttaaagtcca cgggcagctc ccgctctatg gcatgacgat 2701 tgaggagagc gaagacgagt ggggggtgcc ccactgcctg accctccggg gccagcggca 2761 gtccatcatc gtggccgcca gttctcggtc cgagatggag aagtgggttg aggacatcca 2821 gatggccatt gacctggcgg agaagagcag cagccccgcc cctgagttcc tggccagcag 2881 cccccctgac aacaagtccc ctgatgaagc caccgcggct gaccaggagt cagaggatga 2941 cctgagcgcc tcgcgcacat cgctggagcg ccaggccccg caccgcggca acacaatggt 3001 gcacgtgtgc tggcaccgca acaccagcgt ctccatggtg gacttcagca tcgcagtgga 3061 gaatcagttg tctggaaacc tgctgaggaa attcaaaaac agcaacgggt ggcagaagct 3121 gtgggtggtg ttcacaaact tctgcctgtt cttctacaaa tcacaccagg acaatcatcc 3181 ccttgccagc ctgcctctgc tcggctactc gctcaccatc ccctctgagt ccgagaacat 3241 ccagaaagac tacgtgttca agctgcactt caagtcccac gtctactact tcagggcgga 3301 aagcgagtac acgttcgaaa ggtggatgga agtgatccgc agtgccacca gctctgcctc 3361 gcgaccccac gtgttgagcc acaaagagtc tcttgtgtat tgatggccgg acacactcgt 3421 ttccgcagtg gctgctttcc tggaagacgt ttcctttctt ctgtattaat gaagcctggt 3481 aaaattaaca cctgtctgaa aatcaaaaac atggcttccc agcagctcaa aaaaaaaaaa 3541 aaaaaa //