LOCUS BC041338 3074 bp mRNA linear HUM 07-AUG-2007
DEFINITION Homo sapiens FIG4 homolog (S. cerevisiae), mRNA (cDNA clone
MGC:41828 IMAGE:5274004), complete cds.
ACCESSION BC041338
VERSION BC041338.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3074)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3074)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC041338.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 75 Row: f Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 36030904.
FEATURES Location/Qualifiers
source 1..3074
/db_xref="H-InvDB:HIT000052543"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:41828 IMAGE:5274004"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3074
/gene="FIG4"
/gene_synonym="dJ249I4.1"
/gene_synonym="hSac3"
/gene_synonym="RP1-249I4.1"
/gene_synonym="SAC3"
/db_xref="GeneID:9896"
/db_xref="HGNC:HGNC:16873"
/db_xref="MIM:609390"
CDS 172..2895
/gene="FIG4"
/gene_synonym="dJ249I4.1"
/gene_synonym="hSac3"
/gene_synonym="RP1-249I4.1"
/gene_synonym="SAC3"
/codon_start=1
/product="FIG4 homolog (S. cerevisiae)"
/protein_id="AAH41338.1"
/db_xref="GeneID:9896"
/db_xref="HGNC:HGNC:16873"
/db_xref="MIM:609390"
/translation="MPTAAAPIISSVQKLVLYETRARYFLVGSNNAETKYRVLKIDRT
EPKDLVIIDDRHVYTQQEVRELLGRLDLGNRTKMGQKGSSGLFRAVSAFGVVGFVRFL
EGYYIVLITKRRKMADIGGHAIYKVEDTNMIYIPNDSVRVTHPDEARYLRIFQNVDLS
SNFYFSYSYDLSHSLQYNLTVLRMPLEMLKSEMTQNRQESFDIFEDEGLITQGGSGVF
GICSEPYMKYVWNGELLDIIKSTVHRDWLLYIIHGFCGQSKLLIYGRPVYVTLIARRS
SKFAGTRFLKRGANCEGDVANEVETEQILCDASVMSFTAGSYSSYVQVRGSVPLYWSQ
DISTMMPKPPITLDQADPFAHVAALHFDQMFQRFGSPIIILNLVKEREKRKHERILSE
ELVAAVTYLNQFLPPEHTIVYIPWDMAKYTKSKLCNVLDRLNVIAESVVKKTGFFVNR
PDSYCSILRPDEKWNELGGCVIPTGRLQTGILRTNCVDCLDRTNTAQFMVGKCALAYQ
LYSLGLIDKPNLQFDTDAVRLFEELYEDHGDTLSLQYGGSQLVHRVKTYRKIAPWTQH
SKDIMQTLSRYYSNAFSDADRQDSINLFLGVFHPTEGKPHLWELPTDFYLHHKNTMRL
LPTRRSYTYWWTPEVIKHLPLPYDEVICAVNLKKLIVKKFHKYEEEIDIHNEFFRPYE
LSSFDDTFCLAMTSSARDFMPKTVGIDPSPFTVRKPDETGKSVLGNKSNREEAVLQRK
TAASAPPPPSEEAVSSSSEDDSGTDREEEGSVSQRSTPVKMTDAGDSAKVTENVVQPM
KELYGINLSDGLSEEDFSIYSRFVQLGQSQHKQDKNSQQPCSRCSDGVIKLTPISAFS
QDNIYEVQPPRVDRKSTEIFQAHIQASQGIMQPLGKEDSSMYREYIRNRYL"
BASE COUNT 890 a 637 c 714 g 833 t
ORIGIN
1 ggaggcgggg cgcagggatc cggaaacacc tgatcatcta taggtttagt gcctaatggg
61 tgttgttcct ggctggactt gatgtccagg gcctgagggg ttttctcgcc gagtctcctg
121 gggcggtccg gaggctcgtg ccctgttgtg gggcccccat ttgccgccgc catgcccacg
181 gccgccgccc ccatcatcag ctcggtccag aagctggttc tgtatgagac tagagctaga
241 tactttctag ttgggagcaa taatgcagaa acgaaatatc gtgtcttgaa gattgataga
301 acagaaccaa aagatttggt cataattgat gacaggcatg tctatactca acaagaagta
361 agggaacttc ttggccgctt ggatcttgga aatagaacaa agatgggaca gaaaggatcc
421 tcgggcttat ttcgagcggt ttcagctttt ggtgttgtgg gttttgtcag gttcttagaa
481 ggctattata ttgtgttaat aactaaaagg aggaagatgg cggatattgg aggtcatgca
541 atctataagg tcgaagatac aaatatgatc tatataccca atgattctgt acgggttact
601 catcctgatg aagctaggta tctacgaata tttcaaaatg tggacctatc tagcaatttt
661 tactttagtt acagctatga tttgtcccac tcacttcaat ataatctcac tgtcttgcga
721 atgcccctgg agatgttaaa gtcagaaatg acccagaatc gccaagagag ctttgacatc
781 tttgaagatg aaggattaat tacacaaggt ggaagcgggg tatttgggat ctgtagtgag
841 ccttatatga aatatgtatg gaatggtgaa cttctggata taattaaaag tactgtgcat
901 cgtgactggc ttttgtatat tattcatggg ttctgtgggc agtcaaagct gttgatctat
961 ggacgaccag tgtatgtcac tctaatagct agaagatcca gtaaatttgc tggcacccgt
1021 tttcttaaaa gaggtgcaaa ctgtgagggt gatgttgcaa atgaagtgga gactgaacaa
1081 atactctgcg atgcttctgt gatgtctttc actgcaggaa gttattcttc atatgtacaa
1141 gttagaggat ctgtgccctt atactggtct caggacattt caactatgat gcctaaacca
1201 cctattacat tggatcaggc agatccattt gcacatgtgg ctgcccttca ctttgaccag
1261 atgttccaga ggtttggctc tcccatcatc atcttgaatt tagtgaagga acgagagaaa
1321 agaaagcatg aaagaattct gagtgaagaa cttgttgctg ctgtgaccta tctcaaccaa
1381 tttttgcctc ctgagcacac tattgtttat attccctggg acatggccaa gtataccaaa
1441 agcaagctgt gtaatgttct tgatcgacta aatgtgattg cagaaagtgt ggtgaagaaa
1501 acaggtttct ttgtaaaccg ccctgattct tactgtagca ttttgcggcc agatgaaaag
1561 tggaatgaac taggaggatg tgtgattccc actggtcgcc tgcagactgg catccttcga
1621 accaactgtg tggactgttt agatcgcacc aacacagcac agtttatggt gggaaaatgt
1681 gctctggcct atcagctgta ttcactggga ctgattgaca aacctaatct acagtttgat
1741 acagatgcag ttaggttatt tgaggaactc tatgaagatc atggtgatac cctatccctt
1801 cagtatggtg gttctcaact tgttcatcgt gtgaaaacct acagaaagat agcaccatgg
1861 acccagcact ccaaagacat catgcaaacc ctgtctagat attacagcaa tgctttttca
1921 gatgccgata gacaagattc cattaatctc ttcctgggag ttttccatcc cactgaaggg
1981 aaacctcatc tctgggagct cccaacagat ttttatttgc atcacaaaaa taccatgaga
2041 cttttgccaa caagaagaag ttatacttac tggtggacac cagaggtgat aaagcattta
2101 ccattgccct atgatgaagt tatctgtgct gtgaacttaa agaagttgat agtgaagaaa
2161 ttccacaaat atgaagaaga gattgatatc cacaatgagt tctttcggcc atatgagttg
2221 agcagctttg atgatacctt ttgcttggct atgacaagct cagcacgtga ctttatgcct
2281 aagaccgttg gaattgatcc aagtccattt actgtgcgta aaccagatga aactggaaaa
2341 tcagtattgg gaaacaaaag caatagagaa gaagctgtat tacagcggaa aacggcagcc
2401 agcgccccgc cgccacccag cgaggaggct gtgtccagca gctctgagga tgactctggg
2461 actgatcggg aagaagaggg ctctgtgtct cagcgctcca ctcccgtgaa gatgactgat
2521 gcaggagaca gtgccaaagt gaccgagaat gtggtccaac ccatgaagga gctatatgga
2581 attaacctct cagatggcct ctcagaagaa gatttctcca tttattcaag atttgttcag
2641 ctggggcaga gtcaacataa acaagacaag aatagccagc agccctgttc taggtgctca
2701 gatggagtta taaaactaac acccatctcg gctttctcgc aagataacat ctatgaagtt
2761 cagcccccaa gagtagacag aaaatctaca gagatcttcc aagcccacat ccaggccagc
2821 caaggtatca tgcagcccct aggaaaagag gactcctcca tgtaccgaga gtacatcagg
2881 aaccgctacc tgtgaaaaga gcgcaggtcc acctggtgga cacgtctgat tagcttagaa
2941 cctgtcttgt ctcatcttca aaaggtaact tattaaaagt cctttgcgtc tgaagccttt
3001 ctccttttct gtcacttgca aattccaaat tatagctaat aaagatgact agataattaa
3061 aaaaaaaaaa aaaa
//