LOCUS BC041337 4122 bp mRNA linear HUM 12-OCT-2006
DEFINITION Homo sapiens Rho-related BTB domain containing 3, mRNA (cDNA clone
MGC:41820 IMAGE:5285051), complete cds.
ACCESSION BC041337
VERSION BC041337.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4122)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4122)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC041337.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 75 Row: n Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41281538.
FEATURES Location/Qualifiers
source 1..4122
/db_xref="H-InvDB:HIT000052542"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:41820 IMAGE:5285051"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4122
/gene="RHOBTB3"
/gene_synonym="KIAA0878"
/db_xref="GeneID:22836"
/db_xref="HGNC:HGNC:18757"
/db_xref="MIM:607353"
CDS 343..2178
/gene="RHOBTB3"
/gene_synonym="KIAA0878"
/codon_start=1
/product="Rho-related BTB domain containing 3"
/protein_id="AAH41337.1"
/db_xref="GeneID:22836"
/db_xref="HGNC:HGNC:18757"
/db_xref="MIM:607353"
/translation="MSIHIVALGNEGDTFHQDNQPSGLIRTYLGRSPLVSGDESSLLL
NAASTVARPVFTEYQASAFGNVKLVVHDCPVWDIFDSDWYTSRNLIGGADIIVIKYNV
NDKFSFHEVKDNYIPVIKRALNSVPVIIAAVGTRQNEELPCTCPLCTSDRGSCVSTTE
GIQLAKELGATYLELHSLDDFYIGKYFGGVLEYFMIQALNQKTSEKMKKRKMSNSFHG
IRPPQLEQPEKMPVLKAEASHYNSDLNNLLFCCQCVDVVFYNPDLKKVVEAHKIVLCA
VSHVFMLLFNVKSPTDIQDSSIIRTTQDLFAINRDTAFPGASHESSGNPPLRVIVKDA
LFCSCLSDILRFIYSGAFQWEELEEDIRKKLKDSGDVSNVIEKVKCILKTPGKINCLR
NCKTYQARKPLWFYNTSLKFFLNKPMLADVVFEIQGTTVPAHRAILVARCEVMAAMFN
GNYMEAKSVLIPVYGVSKETFLSFLEYLYTDSCCPAGIFQAMCLLICAEMYQVSRLQH
ICELFIITQLQSMPSRELASMNLDIVDLLKKAKFHHSDCLSTWLLHFIATNYLIFSQK
PEFQDLSVEERSFVEKHRWPSNMYLKQLAEYRKYIHSRKCRCLVM"
BASE COUNT 1178 a 888 c 941 g 1115 t
ORIGIN
1 aggaggcgac agctgccagc cgaggaggcg cggcggagag gggactgcgg tcagctgcgt
61 ccacttgggg ctgtgcggcg gtcccgcgcc cggcgatgtt cccgggcact ccctgagtag
121 cggcagctta tcccccgccc gctagcccgc cctggtcccc ggctcgctcg ctggctggcg
181 cggccccggc cccgctctgc gtcggccccg ccgcggtgga ggcgcgcgag ggggacgcgg
241 ccggggatga gcggattgcg ggtgaactcg ccgccggggc cccgcgaagc cgtgagccgc
301 tgcttttctc cgagtcgccg ccctgccctt ggatttgaga tcatgtccat ccacatcgtg
361 gcgctgggga acgaggggga cacattccac caggacaacc agccgtcggg gcttatccgc
421 acttacctgg ggagaagccc tctggtctcc ggggacgaga gcagcttgtt gctgaacgcg
481 gccagcacgg tcgcgcgtcc ggtgttcacc gagtatcagg ccagtgcgtt tgggaatgtc
541 aagctggtgg tccacgactg tcccgtctgg gacatatttg acagtgattg gtacacttct
601 cgaaatctaa ttgggggcgc tgacatcatt gtgatcaaat acaacgttaa tgacaagttt
661 tcattccatg aagtaaagga taattatatt ccagtgataa aaagagcatt aaattcagtt
721 ccagtaatta ttgctgctgt tggtaccaga caaaatgaag agttaccttg tacatgccca
781 ctatgtacct cagacagagg gagctgtgtt agtacaactg aagggatcca acttgcaaaa
841 gaactaggag caacctatct tgaactccac agccttgatg acttctacat aggaaagtat
901 tttggaggag tgttggagta ttttatgatt caagccttaa atcagaagac aagtgaaaaa
961 atgaagaaaa gaaaaatgag caactccttt catggaatta gaccacctca acttgaacaa
1021 ccagaaaaaa tgcctgtctt aaaggctgaa gcgtcacatt ataactctga cttaaataac
1081 ttgctgttct gctgccagtg tgtggacgtg gtattttata accccgattt aaagaaagtt
1141 gtagaggccc acaagatcgt tctctgcgct gtaagccatg ttttcatgct gcttttcaat
1201 gtgaagagtc ccactgacat tcaggattcc agtatcatcc gaactaccca ggatcttttt
1261 gctataaaca gagatactgc atttccaggt gctagccatg aatcttcagg caacccacca
1321 ttacgagtca ttgttaaaga cgccctcttc tgttcttgtt tatcagacat ccttcgcttc
1381 atttattcag gtgcttttca gtgggaagaa ttggaagaag atatcaggaa gaagttgaaa
1441 gattctgggg atgtttcaaa tgtaatcgag aaagttaaat gcattttaaa aacaccagga
1501 aagattaatt gcctaaggaa ttgcaaaacc tatcaagcca gaaaaccttt gtggttttat
1561 aacacttccc tcaagttttt ccttaataag ccgatgcttg ccgatgttgt cttcgaaatt
1621 caaggtacga cagtgccagc ccacagggcc atcctggtgg cccgttgtga agtgatggca
1681 gccatgttta atggtaatta catggaagca aagagtgtcc tgattcccgt ttatggtgtt
1741 tccaaagaga ctttcttgtc atttttagaa tacctgtaca cagactcctg ctgcccagct
1801 ggcatattcc aggccatgtg tctcctgatc tgtgccgaga tgtaccaagt gtccagactg
1861 cagcacatct gtgagctgtt catcattacc cagctgcaga gcatgccaag cagggaactg
1921 gcatccatga accttgatat agttgacctg cttaaaaagg ccaagtttca ccactctgat
1981 tgcctttcaa cctggctact tcatttcatt gctactaact acctcatctt cagtcaaaag
2041 cctgaatttc aggatctttc agtggaagaa cgcagttttg ttgaaaagca cagatggccg
2101 tcgaatatgt acttgaagca gcttgcggaa tacaggaagt atattcactc ccggaaatgt
2161 cgttgcttag taatgtaacc tggagctttt atacactaca tttctttttt attattatga
2221 agaatgggat acctccaggt tccagtaaaa ttcttctgac cgaaaccaat gtgggtgtta
2281 gaaaaattac catatagctt aatatgttta ttagttctct ttggaaaaaa actaccactg
2341 tggtcttaaa agggaacaaa atataccata ggctaaaact aaggctttca ctctagaatg
2401 caaagctgtt ttgcagctgt tttcccttaa agatgtcctg ttgctttagt gatatttaga
2461 cccctctcag ttaagaaatg cttagattaa aaaaaaaaaa ttacgtagga ttaatacaga
2521 aatttaatca tgtctgatta attgctctat taaaataagg ggcatttaaa gacccagcat
2581 aaccatttgt ataatgagaa atctagggga aaaccaatca gtccaacatg agattttagg
2641 aatagaaatt tgccggccat ttggaaagtg aaatgccact tagttctcaa ttgatgacag
2701 tgtttgaatc atcataaaaa aaatacctgc ttttcatctg gacaacccaa ttgagccact
2761 ttatctcctt ttggcaatct gagtaggcgg ggaacctagg cagggctggc tttcttagcg
2821 tgtaacttgt gtagcagcac agggcccaca cttagaagga ccccacactt ggttcaaggc
2881 tctgctatag cggaaattct taataatgtt tgaagaaggg ccccatgatt tcattttgtg
2941 ctgagccctc aaaattatgt ctgtttcgtg gtgggaaata tcctatgttt tcttgctcaa
3001 acacctttct ctctgaaagc agaaaaaggc actgatataa agggaagaga aggaggctca
3061 ccggagggaa gagaacatag tgaagattcc cgcctttggg gaggtctgga ccacccaggg
3121 cctccactgc caccttggct ggcaagggag aaatgtgttg tgttgtctta gctttaaaac
3181 agtcacagtt cttgctctat catagatgaa caaatacttt cttgatcatt ctgtaagacc
3241 aggaggttgg taagagtgac taaccagcct aactttaata cacatgtata aagatgttca
3301 cagagaaaga tgctctgtag agaatttgct accgaagttg gctcaagaat ttgtttttag
3361 tgttatttac caagattagg acgtcagtgg cttaaattct ttgaattctt ttcaaggact
3421 gcaagattat ttgataaaga gtagcatgaa tcttgtgctc taatattaca cagtaagttc
3481 aaagaaagga tgtaagtcaa agacttgtta catagaggga aaatggactg ggatagagga
3541 cagactgata gtttctttct ttcatatcac atgtatagag aaataattat atcagaaact
3601 cacaaaccta gacatggaaa aacagattac tgtctattgt cagcatcatt ttcatctgta
3661 agtcactact ggaatatatt tttcttttaa tttccagtga ctttagaata cacacagttt
3721 ttccgacttt tcaaaaattt gattaaatgg ttttatagta taatattggg accccatacc
3781 gttagccctt gtatgtatac caacactgcc aaagtaaaac attaggtcag gcatggtggc
3841 tcaggcctgt aatcccagca ttttgggagg ctgaggcaag tggataactt gaggtcatga
3901 gttcgaaacc agcctggcca aaacagtgaa accccgtctc tactaaaaat acaaaattag
3961 ccagatgtgg tggcgcacac ctgtaatccc agctactcag gaagctgagg caggaaaatc
4021 gcttgaacct gggaggtgga agttgcagtg agccgagatc gcaccactgc actccagcct
4081 gggtgacaag agcgaaactc catcacaaaa aaaaaaaaaa aa
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