LOCUS BC041160 2253 bp mRNA linear HUM 03-NOV-2008
DEFINITION Homo sapiens coiled-coil domain containing 88A, mRNA (cDNA clone
IMAGE:3906864), partial cds.
ACCESSION BC041160
VERSION BC041160.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2253)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2253)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 84 Row: b Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 50897851.
FEATURES Location/Qualifiers
source 1..2253
/db_xref="H-InvDB:HIT000096602"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3906864"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>2253
/gene="CCDC88A"
/gene_synonym="APE"
/gene_synonym="GIRDIN"
/gene_synonym="GIV"
/gene_synonym="GRDN"
/gene_synonym="HkRP1"
/db_xref="GeneID:55704"
/db_xref="HGNC:HGNC:25523"
/db_xref="MIM:609736"
CDS 749..>2253
/gene="CCDC88A"
/gene_synonym="APE"
/gene_synonym="GIRDIN"
/gene_synonym="GIV"
/gene_synonym="GRDN"
/gene_synonym="HkRP1"
/codon_start=1
/product="CCDC88A protein"
/protein_id="AAH41160.1"
/db_xref="GeneID:55704"
/db_xref="HGNC:HGNC:25523"
/db_xref="MIM:609736"
/translation="MENEIFTPLLEQFMTSPLVTWVKTFGPLAAGNGTNLDEYVALVD
GVFLNQVMLQINPKLESQRVNKKVNNDASLRMHNLSILVRQIKFYYQETLQQLIMMSL
PNVLIIGKNPFSEQGTEEVKKLLLLLLGCAVQCQKKEEFIERIQGLDFDTKAAVAAHI
QEVTHNQENVFDLQWMEVTDMSQEDIEPLLKNMALHLKRLIDERDEHSETIIELSEER
DGLHFLPHASSSAQSPCGSPGMKRTESRQHLSVELADAKAKIRRLRQELEEKTEQLLD
CKQELEQMEIELKRLQQENMNLLSDARSARMYRDELDALREKAVRVDKLESEVSRYKE
RLHDIEFYKARVEELKEDNQVLLETKTMLEDQLEGTRARSDKLHELEKENLQLKAKLH
DMEMERDMDRKKIEELMEENMTLEMAQKQSMDESLHLGWELEQISRTSELSEAPQKSL
GHEVNELTSSRLLKLEMENQSLTKTVEELRTTVEKVEGNASKILKMEKKKK"
BASE COUNT 668 a 436 c 581 g 568 t
ORIGIN
1 gaaggctgga gcgcggcggt gattttgtgc cagggattcc cagagacgcg ctgaaaggct
61 ggcagggctt aggaagctgg ggggttaggg acacacattc aagcccccac ccccgggagg
121 ggaagggggc tggaggcgag gcttgagggc ggcggaggaa tggtgtctgc tcggggggaa
181 ggggcgagcc ctgcctgttg gtactgaggg gctgcgggca gtggaggctc cgcgggtcga
241 aagcggctcc atgcccatcg gtgggtggaa cgtgtagagg tcggaacgcc gaggtcgagt
301 ctggtggcgc ctcggtatcc ttaacgtggt ctctgtttaa cgtatttcat ttagcccccg
361 ttgggattga ttcattggga gcagtttcgc tggtctggat cctccaggag ctggacaacc
421 ttgacgggct ttttgtcttg ggttccagcc ccctttccct tcctcctcct ccagatgcct
481 tttctctgcc cctcctcgcc cggtacagac atttccagcg caggctgctg ctcgtggtgt
541 ccgtcgtcga agccacttct tgggatttcg gctcgtttca ctctggggtg ttttttgagg
601 agggagagtg cccccctcct ccacgatggg atttttctcc cttgccgaaa tggactttca
661 ttgatttcta cttacttcca cgtttagtga ccaattccct aggcgtattt ttgtggtagt
721 tccttttttc aaatacatac tctgtaaaat ggagaacgaa atttttactc cccttctgga
781 gcagttcatg accagccctt tggtcacttg ggttaaaacg tttggacctc tggccgcagg
841 aaatgggacc aaccttgatg aatatgtggc tttggtggat ggggtattct tgaaccaggt
901 catgctccaa attaatccta aattggagag tcagagagta aataaaaaag tcaataatga
961 tgcctcactt agaatgcaca atctatccat tttggtgaga cagataaaat tttattacca
1021 ggagactttg cagcaattga tcatgatgtc gttgccaaat gtcttaatca ttggcaaaaa
1081 tcccttttct gaacaaggca cagaagaagt taaaaaactg cttttacttt tattgggttg
1141 tgcagttcag tgtcagaaaa aagaggaatt tattgaaaga attcaaggtt tagattttga
1201 tacaaaagca gcggttgccg cacatattca agaggtaact cataatcagg aaaatgtgtt
1261 tgacctgcaa tggatggaag tgactgatat gtcgcaggag gacatagaac cactcttgaa
1321 aaatatggca ttgcatctaa aaagacttat agatgagaga gatgaacatt cagagactat
1381 catagaactc tctgaagagc gggatggtct ccattttcta ccccatgcct cttcatctgc
1441 acagtcaccc tgtggttctc caggcatgaa gcgaacagaa agtcgacaac atctgtcggt
1501 ggaactggca gatgctaaag ccaagataag aaggcttagg caggaattgg aggaaaagac
1561 tgagcagttg ttggattgta aacaagaact tgagcaaatg gaaatagaac tcaaaaggct
1621 gcaacaagag aacatgaatt tgctttcgga tgctcgctct gccagaatgt accgagatga
1681 attagatgca cttcgagaga aagcagtcag agtcgataag cttgaaagtg aagtcagcag
1741 atataaagag agactacatg atattgaatt ttataaggca agagttgagg aattaaaaga
1801 agacaatcaa gttttattag aaacaaaaac catgttggaa gaccaactag agggaactcg
1861 tgctcgttct gataaattac atgaattaga aaaagagaac ttacaactga aagctaaact
1921 tcatgatatg gaaatggaac gagatatgga tagaaaaaag attgaagaat taatggaaga
1981 aaatatgact ttggaaatgg cacagaaaca aagtatggat gaatcattac atcttggctg
2041 ggaactggaa cagatatcca gaactagtga actttccgaa gcaccccaga aatccctggg
2101 ccatgaggtg aatgagttga catcaagtag attattgaag ctagagatgg aaaatcaaag
2161 tttgacaaaa accgtagaag agcttcggac tactgtggaa aaagtagaag gcaatgcttc
2221 caaaatcctg aaaatggaaa aaaaaaaaaa aaa
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