LOCUS BC041142 4154 bp mRNA linear HUM 01-SEP-2006
DEFINITION Homo sapiens xenotropic and polytropic retrovirus receptor, mRNA
(cDNA clone MGC:47521 IMAGE:5582839), complete cds.
ACCESSION BC041142
VERSION BC041142.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4154)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4154)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 82 Row: h Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19923271.
FEATURES Location/Qualifiers
source 1..4154
/db_xref="H-InvDB:HIT000052521"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:47521 IMAGE:5582839"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4154
/gene="XPR1"
/gene_synonym="SYG1"
/gene_synonym="X3"
/db_xref="GeneID:9213"
/db_xref="HGNC:HGNC:12827"
/db_xref="MIM:605237"
CDS 171..2066
/gene="XPR1"
/gene_synonym="SYG1"
/gene_synonym="X3"
/codon_start=1
/product="XPR1 protein"
/protein_id="AAH41142.1"
/db_xref="GeneID:9213"
/db_xref="HGNC:HGNC:12827"
/db_xref="MIM:605237"
/translation="MKFAEHLSAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDE
DTVKRYFAKFEEKFFQTCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKEST
GVTTLRQRRKPVFHLSHEERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKIL
KKHDKILETSRGADWRVAHVEVAPFYTCKKINQLISETEAVVTNELEDGDRQKAMKRL
RVPPLGAAQPAPAWTTFRVGLFCGIFIVLNITLVLAAVFKLETDRSIWPLIRIYRGGF
LLIEFLFLLGINTYGWRQAGVNHVLIFELNPRSNLSHQHLFEIAGFLGILWCLSLLAC
FFAPISVIPTYVYPLALYGFMVFFLINPTKTFYYKSRFWLLKLLFRVFTAPFHKVGFA
DFWLADQLNSLSVILMDLEYMICFYSLELKWDESKGLLPNNSEERGHSDTMVFFYLWI
VFYIISSCYTLIWDLKMDWGLFDKNAGENTFLREEIVYPQKAYYYCAIIEDVILRFAW
TIQISITSTTLLPHSGDIIATVFAPLEVFRRFVWNFFRLENEHLNNCGEFRAVRDISV
APLNADDQTLLEQMMDQDDGVRNRQKNRSWKYNQSISLRRPRLASQSKARDTKVLIED
TDDEANT"
BASE COUNT 1164 a 878 c 846 g 1266 t
ORIGIN
1 ggaggaagat ggcgggcggg ctgctctgaa gagacctcgg cggcggcgga ggaggagaga
61 agcgcagcgc cgcgccgcgc cggggcccat gtggggagga gtcggagtcg ctgttgccgc
121 cgccgcctgt agctgctgga cccgagtggg agtgaggggg aaacggcagg atgaagttcg
181 ccgagcacct ctccgcgcac atcactcccg agtggaggaa gcaatacatc cagtatgagg
241 ctttcaagga tatgctgtat tcagctcagg accaggcacc ttctgtggaa gttacagatg
301 aggacacagt aaagaggtat tttgccaagt ttgaagagaa gtttttccaa acctgtgaaa
361 aagaacttgc caaaatcaac acattttatt cagagaagct cgcagaggct cagcgcaggt
421 ttgctacact tcagaatgag cttcagtcat cactggatgc acagaaagaa agcactggtg
481 ttactacgct gcgacaacgc agaaagccag tcttccactt gtcccatgag gaacgtgtcc
541 aacatagaaa tattaaagac cttaaactgg ccttcagtga gttctacctc agtctaatcc
601 tgctgcagaa ctatcagaat ctgaatttta cagggtttcg aaaaatcctg aaaaagcatg
661 acaagatcct ggaaacatct cgtggagcag attggcgagt ggctcacgta gaggtggccc
721 cattttatac atgcaagaaa atcaaccagc ttatctctga aactgaggct gtagtgacca
781 atgaacttga agatggtgac agacaaaagg ctatgaagcg tttacgtgtc ccccctttgg
841 gagctgctca gcctgcacca gcatggacta cttttagagt tggcctattt tgtggaatat
901 tcattgtact gaatattacc cttgtgcttg ccgctgtatt taaacttgaa acagatagaa
961 gtatatggcc cttgataaga atctatcggg gtggctttct tctgattgaa ttcctttttc
1021 tactgggcat caacacgtat ggttggagac aggctggagt aaaccatgta ctcatctttg
1081 aacttaatcc gagaagcaat ttgtctcatc aacatctctt tgagattgct ggattcctcg
1141 ggatattgtg gtgcctgagc cttctggcat gcttctttgc tccaattagt gtcatcccca
1201 catatgtgta tccacttgcc ctttatggat ttatggtttt cttccttatc aaccccacca
1261 aaactttcta ctataaatcc cggttttggc tgcttaaact gctgtttcga gtatttacag
1321 cccccttcca taaggtaggc tttgctgatt tctggctggc ggatcagctg aacagcctgt
1381 cagtgatact gatggacctg gaatatatga tctgcttcta cagtttggag ctcaaatggg
1441 atgaaagtaa gggcctgttg ccaaataatt cagaagaacg aggtcactcg gacactatgg
1501 tgttctttta cctgtggatt gtcttttata tcatcagttc ctgctatacc ctcatctggg
1561 atctcaagat ggactggggt ctcttcgata agaatgctgg agagaacact ttcctccggg
1621 aagagattgt atacccccaa aaagcctact actactgtgc cataatagag gatgtgattc
1681 tgcgctttgc ttggactatc caaatctcga ttacctctac aactttgttg cctcattctg
1741 gggacatcat tgctactgtc tttgccccac ttgaggtttt ccggcgattt gtgtggaact
1801 tcttccgcct ggagaatgaa catctgaata actgtggtga attccgtgct gtgcgggaca
1861 tctctgtggc ccccctgaac gcagatgatc agactctcct agaacagatg atggaccagg
1921 atgatggggt acgaaaccgc cagaagaatc ggtcatggaa gtacaaccag agcatatccc
1981 tgcgccggcc tcgcctcgct tctcaatcca aggctcgtga cactaaggta ttgatagaag
2041 acacagatga tgaagctaac acttgaattt tctgaagtct agcttaacat ctttggtttt
2101 cctactctac aatcctttcc tcgaccaacg caacctctag tacctttcca gccgaaaaca
2161 ggagaaaaca cataacacat tttccgagct cttccggatc ggatcctatg gactccaaac
2221 aagctcactg tgtttctttt cttttcttct ggtttaattt taattttcta ttttcaaaac
2281 aaatatttac ttcatttgcc aatcagagga tgttttaaga aacaaaacat agtatcttat
2341 ggattgttta caatcacaag gacatagata cctatcagga tgaagaacag gcattgcaag
2401 gaccctctga tgggacggta ctgagatatc tcggcttccg ctcagcccgg ttttgactgg
2461 ttgaaaccgg acattggttt ttaaattttt tgtcagttta tgtggagaat ttttttcttt
2521 ccttcatacc cagcgcaaag gcactggccg cacttgcagg aaaagtgcaa cttaaagcag
2581 taccttcatt catgaagcta ctttttaatt tgatgtaact tttcttattt tgggaagggt
2641 tgctgggtgg gtgggaaata tgatgtattt gttacacata gttttctcat tatttatgaa
2701 acttaaccat acagaatgat ataactcctg tgcaatgaag gtgataacag taaaagaagg
2761 caggggaaac ttacgttgga tgacatttat gagggtcagt cccacatacc tctttcagga
2821 gacaacttgc accagtttga ccttttcttt tctttgtttt tattttaagc caaagtttca
2881 ttgctaactt cttaagttgc tgctgcttta gagtcctgag catatctctc gtaacaagga
2941 atcccacact tcacaccacc ggctgaattt catggaagag gttctgataa tttttttaac
3001 tttttaagga acagatgtgg aatacactgg cccatatttc aaccttaaca gctgaagcta
3061 tgccttatta tgcatccaca tgtatggtcc ctgtagcgtg acctttacta gctctgaatc
3121 agaagacaga gctatttcag aggctctgtg tgccctcact agatagtttt tcttctgggt
3181 tcaaccactt tagccagaat ttgatcaaat taaaagtctg tcatggggaa actatatttt
3241 tgagcacatg gaacaaatta tacttcctca ttcatattat gttgatacaa aagaccttgg
3301 cagccatttc tcccagcagt tttaaaggat gaacattgga tttcatgcca tcccatagaa
3361 aacctgtttt aaaattttag ggatctttac ttggtcatac atgaaaagta cactgcttag
3421 aaattataga ctattatgat ctgtccacag tgcccattgt cacttctttg tctcatttct
3481 tccctttgtt ccttagtcat ccaaataagc ctgaaaacca taagagatat tactttattg
3541 aatatggttg gcattaaatt tagcatttca ttatctaaca aaattaatat aaattccagg
3601 acatggtaaa atgtgtttta ataaccccca gacccaaatg aaaatttcaa agtcaatacc
3661 agcagattca tgaaagtaaa tttagtccta taattttcag cttaattata aacaaaggaa
3721 caaataagtg gaagggcagc tattaccatt cgcttagtca aaacattcgg ttactgccct
3781 ttaatacact cctatcatca gcacttccac catgtattac aagtcttgac ccatccctgt
3841 cgtaactcca gtaaaagtta ctgttactag aaaattttta tcaattaact gacaaatagt
3901 ttctttttaa agtagtttct tccatcttta ttctgactag cttccaaaat gtgttccctt
3961 tttgaatcga ggtttttttg ttttgttttg ttttctgaaa aaatcataca actttgtgct
4021 tctattgctt ttttgtgttt tgttaagcat gtcccttggc ccaaatggaa gaggaaatgt
4081 ttaattaatg ctttttagtt taaataaatt gaatcattta taataaaaaa aaaaaaaaaa
4141 aaaaaaaaaa aaaa
//