LOCUS BC041136 3700 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens nucleoporin 98kDa, mRNA (cDNA clone MGC:47603
IMAGE:5179730), complete cds.
ACCESSION BC041136
VERSION BC041136.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3700)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3700)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 82 Row: d Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 56549642.
FEATURES Location/Qualifiers
source 1..3700
/db_xref="H-InvDB:HIT000052520"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:47603 IMAGE:5179730"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3700
/gene="NUP98"
/gene_synonym="ADIR2"
/gene_synonym="NUP196"
/db_xref="GeneID:4928"
/db_xref="HGNC:HGNC:8068"
/db_xref="MIM:601021"
CDS 171..2933
/gene="NUP98"
/gene_synonym="ADIR2"
/gene_synonym="NUP196"
/codon_start=1
/product="nucleoporin 98kDa"
/protein_id="AAH41136.1"
/db_xref="GeneID:4928"
/db_xref="HGNC:HGNC:8068"
/db_xref="MIM:601021"
/translation="MFNKSFGTPFGGGTGGFGTTSTFGQNTGFGTTSGGAFGTSAFGS
SNNTGGLFGNSQTKPGGLFGTSSFSQPATSTSTGFGFGTSTGTANTLFGTASTGTSLF
SSQNNAFAQNKPTGFGNFGTSTSSGGLFGTTNTTSNPFGSTSGSLFGPSSFTAAPTGT
TIKFNPPTGTDTMVKAGVSTNISTKHQCITAMKEYESKSLEELRLEDYQANRKGPQNQ
VGAGTTTGLFGSSPATSSATGLFSSSTTNSGFAYGQNKTAFGTSTTGFGTNPGGLFGQ
QNQQTTSLFSKPFGQATTTQNTGFSFGNTSTIGQPSTNTMGSFGVTQASQPGGLFGTA
TNTSTGTAFGTGTGLFGQTNTGFGAVGSTLFGNNKLTTFGSGTTSAPSFGTTSGGLFG
FGTNTSGNSIFGSKPAPGTLGTGLGAGFGTALGAGQASLFGNNQPKIGGPLGTGAFGA
PGFNTTTATLGFGAPQAPVALTDPNASAAQQAVLQQHINSLTYSPFGDSPLFRNPMSD
PKKKEERLKPTNPAAQKALTTPTHYKLTPRPATRVRPKALQTTGTAKSHLFDGLDDDE
PSLANGAFMPKKSIKKLVLKNLNNSNLFSPVNRDSENLASPSEYPENGERFSFLSKPV
DENHQQDGDEDSLVSHFYTNPIAKPIPQTPESAGNKHSNSNSVDDTIVALNMRAALRN
GLEGSSEETSFHDESLQDDREEIENNSYHMHPAGIILTKVGYYTIPSMDDLAKITNEK
GECIVSDFTIGRKGYGSIYFEGDVNLTNLNLDDIVHIRRKEVVVYLDDNQKPPVGEGL
NRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSW
VFKVSHFSKYGLQDSDEEEEEHPSKTSTKKLKTAPLPPASQTTPLQMALNGKPAPPPQ
VEKKGQ"
BASE COUNT 1081 a 799 c 817 g 1003 t
ORIGIN
1 ctgcgcgctg cgcccgaagc ggcggtcggt ggcaggggtg gtagcggcgg cggcgacggt
61 ttcgtggggg ccgcgcgctg ctctgtgagc ggcgggtggc agcaggggac tcctgacact
121 tccccttccc caccgaaccg cgctttctga aacaaagact cattttgaag atgtttaaca
181 aatcatttgg aacacccttt gggggtggca caggtggctt tggcacaact tcaacatttg
241 gacagaatac tggctttggc actactagtg gaggggcatt tggaacatct gcatttggtt
301 ctagcaacaa tactggaggc ctctttggaa attcacagac taaaccagga ggattgtttg
361 gaaccagttc atttagccag ccagctacct ccacaagcac tggctttggg tttggtacgt
421 caacaggaac agcaaatacc ttgtttggaa ctgcaagcac agggaccagt ctcttctcat
481 cccaaaacaa tgcctttgca caaaataaac caactggctt tggcaatttt ggaaccagta
541 ctagcagtgg aggactcttt ggaaccacaa ataccacctc taatcctttt ggcagcacat
601 ctggctccct ctttgggcca agtagtttta cagctgctcc tactgggact actattaaat
661 ttaaccctcc aactggtaca gatactatgg tcaaagctgg agttagcact aacataagta
721 ccaagcacca gtgtattact gctatgaaag aatatgaaag caagtcacta gaggaacttc
781 gtttagagga ttatcaggct aacaggaagg gcccacagaa ccaggtggga gcaggtacca
841 caactggctt gtttgggtct tctccagcca cttccagcgc aacaggactc ttcagctcct
901 ccaccactaa ttcaggcttt gcatatggtc agaacaaaac tgcctttgga actagtacaa
961 ctggatttgg aacaaatcca ggtggtctct ttggccaaca gaatcagcag actaccagcc
1021 tcttcagcaa accatttggc caggctacaa ccacccagaa cactggcttt tcctttggta
1081 ataccagcac cataggacag ccaagcacca acaccatggg atcatttgga gtaacccaag
1141 cctcacagcc tggaggtctt tttgggacag ctacaaacac cagcactggg acagcatttg
1201 gaacaggaac aggtctcttt gggcagacca atactggatt tggtgctgtt ggttcgaccc
1261 tgtttggcaa taacaagctt actacatttg gaagcggcac aaccagtgca ccttcatttg
1321 gtacaaccag tggcgggctc tttggttttg gcacaaatac cagtgggaat agtatttttg
1381 gaagtaaacc agcacctggg actcttggaa ctgggcttgg tgcaggattt ggaacagctc
1441 ttggtgctgg acaggcatct ttgtttggga acaaccaacc taagattgga gggcctcttg
1501 gtacaggagc ctttggggcc cctggattta atactacgac agccactttg ggctttggag
1561 ccccccaggc cccagtagct ttgacagatc caaatgcttc tgctgcccag caggctgttc
1621 tccagcagca catcaatagt ctaacatact caccttttgg agactctcct ctcttccgga
1681 atccgatgtc agaccctaag aagaaggaag agagattgaa accaacaaat ccagcagccc
1741 agaaggctct tactacacct actcattata aactgacacc ccgccctgcc actagagtcc
1801 ggccaaaggc tttacaaaca acaggcacag ccaagtcaca tctctttgat gggctggatg
1861 acgatgaacc atccctagcc aatggagcat tcatgcccaa gaagagcatt aagaagttgg
1921 ttttgaagaa ccttaataat agcaatctct tttctcctgt taatcgtgat tcagaaaatc
1981 tagcttcacc atctgaatat ccagaaaatg gagagagatt tagtttccta agcaaacctg
2041 ttgatgagaa tcaccagcag gatggagatg aagattccct tgtttcacat ttttatacta
2101 accctattgc caaacctatt cctcaaaccc cagaaagtgc tggaaataaa cacagcaaca
2161 gcaacagtgt ggatgatacc attgttgcat taaacatgcg tgctgctttg cgaaatgggc
2221 tggaaggaag cagtgaagaa acgtcttttc atgatgagtc acttcaggat gaccgagaag
2281 aaatagaaaa taattcttac catatgcacc cagcaggtat tattctcact aaggttggtt
2341 actatactat tccatctatg gatgaccttg ctaaaattac caatgaaaaa ggagagtgca
2401 ttgtctctga tttcactatt ggtcggaaag gttatggttc aatctatttt gaaggagatg
2461 tgaatttgac aaatctaaat ttggatgata ttgtgcatat ccggaggaaa gaagtagttg
2521 tctacttaga tgataaccaa aaaccacctg tgggtgaagg gctaaatagg aaggctgaag
2581 ttacattgga tggagtttgg ccaacagata aaacatctcg ttgtttaata aagagcccag
2641 atcgccttgc tgatatcaac tatgaaggaa gattggaagc agtttcaagg aaacagggag
2701 ctcaattcaa agaataccgg cctgaaactg gttcttgggt gtttaaggtc tcccattttt
2761 ctaagtatgg ccttcaggat tctgatgaag aggaggagga gcatccgtct aaaactagta
2821 caaagaagtt gaagactgct cctttgcctc ctgcaagcca gactacgccc ttgcagatgg
2881 ctcttaatgg caaacctgca cctccacctc aggtagagaa aaaaggacag tgaatttgaa
2941 tggaatccgt gataccgaag ttgaaagcaa gtcattcagc taatacaaag ctgttttatg
3001 acccttggaa ctttgaagag tacaaacatt ggcaatcacg ttgaaacaag tgcaagggag
3061 ggcgtgaggt cttgcaggca tctgtctttt tactggagag atttaaagaa ttctcttgct
3121 gtttggatta ttcctctaca gattgtcatt tttaaaccct ttgttctctc tcatttggac
3181 ttgctgaatt ctctgctcag tgattaactt aagatttgct catgtgggtt catgcacagt
3241 aaattctgcc tttattgact acctgatgtg cagtttaatc tttttcttta cctccatggt
3301 tttttaaaag ttaaattagc tttctgaaag ggtttttaat ctccattttt ttaaagttgt
3361 ttgcttatac ttcgggtaac cttgatattt gtattttaat agtacataat ctttatgaaa
3421 aatagtttgg gaatgtaaat gaattattat ttggcttggg gagattaggg cctacattgt
3481 ttatcgcaat tacttgtatc attgatacgg gatttctttg taaagcatcc tctacctctc
3541 agctgctgaa agctagacct ttggtatttt ccatgctata attcttatgg ctgctgaaat
3601 gtgtggtttt tatgatttat taaataatct cttaggaggc aaaaaaaaaa aaaaaaaaaa
3661 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//