LOCUS BC041028 2547 bp mRNA linear HUM 22-AUG-2008
DEFINITION Homo sapiens carbohydrate kinase domain containing, mRNA (cDNA
clone MGC:52265 IMAGE:4098260), complete cds.
ACCESSION BC041028
VERSION BC041028.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2547)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2547)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 44 Row: c Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 8922653.
FEATURES Location/Qualifiers
source 1..2547
/db_xref="H-InvDB:HIT000052482"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:52265 IMAGE:4098260"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2547
/gene="CARKD"
/gene_synonym="LP3298"
/db_xref="GeneID:55739"
/db_xref="HGNC:HGNC:25576"
CDS 23..1066
/gene="CARKD"
/gene_synonym="LP3298"
/codon_start=1
/product="CARKD protein"
/protein_id="AAH41028.1"
/db_xref="GeneID:55739"
/db_xref="HGNC:HGNC:25576"
/translation="MVTRAGAGTAVAGAVVVALLSAALALYGPPLDAVLERAFSLRKA
HSIKDMENTLQLVRNIIPPLSSTKHKGQDGRIGVVGGCQEYTGAPYFAAISALKVGAD
LSHVFCASAAAPVIKAYSPELIVHPVLDSPNAVHEVEKWLPRLHALVVGPGLGRDDAL
LRNVQGILEVSKARDIPVVIDADGLWLVAQQPALIHGYRKAVLTPNHVEFSRLYDAVL
RGPMDSDDSHGSVLRLSQALGNVTVVQKGERDILSNGQQVLVCSQEGSSRRCGGQGDL
LSGSLGVLVHWALLAGPQKTNGSSPLLVAAFGACSLTRQCNHQAFQKHGRSTTTSDMI
AEVGAAFSKLFET"
BASE COUNT 562 a 661 c 713 g 611 t
ORIGIN
1 gtcgattcca tttggcccgg ggatggtcac acgcgcgggg gccggaactg ccgtcgccgg
61 cgcggtcgtt gtcgcattgc tctcggccgc actcgcgctg tacgggccgc cactggacgc
121 agttttagaa agagcgtttt cgctacgtaa agcacattcg ataaaggata tggaaaatac
181 tttgcagctg gtgagaaata tcatacctcc tctgtcttcc acaaagcaca aagggcaaga
241 tggaagaata ggcgtagttg gaggctgtca ggagtacact ggagccccat attttgcagc
301 aatctcagct ctcaaagtgg gcgcagactt gtcccacgtg ttctgtgcca gtgcggccgc
361 acctgtgatt aaggcctaca gcccggagct gatcgtccac ccagttcttg acagccccaa
421 tgctgttcat gaggtggaga agtggctgcc ccggctgcat gctcttgtcg taggacctgg
481 cttgggtaga gatgatgcgc ttctcagaaa tgtccagggc attttggaag tgtcaaaggc
541 cagggacatc cctgttgtca tcgacgcgga tggcctgtgg ctggtcgctc agcagccggc
601 cctcatccat ggctaccgga aggctgtgct cactcccaac cacgtggagt tcagcagact
661 gtatgacgct gtgctcagag gccctatgga cagcgatgac agccatggat ctgtgctaag
721 actcagccaa gccctgggca acgtgacggt ggtccagaaa ggagagcgcg acatcctctc
781 caacggccag caggtgcttg tgtgcagcca ggaaggcagc agccgcaggt gtggagggca
841 aggggacctc ctgtcgggct ccctgggcgt cctggtacac tgggcgctcc ttgctggacc
901 acagaaaaca aatgggtcca gccctctcct ggtggccgcg tttggcgcct gctctctcac
961 caggcagtgc aaccaccaag ccttccagaa gcacggtcgc tccaccacca cctccgacat
1021 gatcgccgag gtgggggccg ccttcagcaa gctctttgaa acctgagccc acgcagacca
1081 gaagtaaaca ggcaccttgg acgggggaga gcgtgtgtgt gatgggaaaa tccggaccca
1141 cgcgtgtgct gaaggcgcac ggtgcttgcc agattttcaa cttgagcata aattggttgc
1201 cattgagaat ttaagaatct ggaatattgc agctcttggt taaacttaat gcatggttgg
1261 agatgttatg gcgacactaa acaaagtatt cctgaacttt ccttagctcc ttggtagtaa
1321 ctgggaagac agaaatgaag aaaatcacat gagaatgaag aattctttag cagctcaaca
1381 gagtttctcg gcctgctccc agatcggcga agtttctact tgttactctc tctgccgacg
1441 cccttcattc cccccgcttc ccttccctag tctttcctcc ggcagggagc tgggcagggg
1501 tccccgggtg tctccctgag tcccgactgc actgactggg tccatcagag ggctgcttcg
1561 ttctccagct catcttcttt taaagtggtg actagcttgg tggtatctgg ctgctggtgt
1621 ttggcttatt gacatactcc agggtaatca atgatgactt tgtttggaaa cccttttgga
1681 ggcaccatgg gaacagaagg aaacatgagt gacgctgacc cttgagcgtg tgggtgggga
1741 gctctgagac gcctcctgtc ccacgctctc cggtgtccgt gtctacacag gggtccccat
1801 gatacccacc agccccagca gggcagaccg gaccggggac gggcacggtg aagggctgca
1861 gcctggggtc tgacgtggcc cctagtgctg tctcaggaga aggctctgga ggacttgagg
1921 catgctgggc ctggtgcagt gatggcgcta aggagacccg gggaaagaca gtatcgtggt
1981 cacgtatgct taggaagcag cacagccgtg tccttaggga tgttcgcgtc cagtaaagac
2041 actggtaact gcggtttcag ccaacactct tcatggcagt gtcgacctcg ggttagcttc
2101 tgttgtcttt gtggatggtt ttcctggagc ggcctgacgt tgacgtgttc tctggtccca
2161 tgtcttagcg gggcatggta cggtttcgtg cctgacgcgt gcattagggt gttctcttat
2221 actttcagta gcgtctttcc acagcaaggg ccaaaccctc ctggttccct tcagagtctt
2281 tttggcctga tgatgactct tgagtgatac cctgtgatgc agacatgccc cagatggatt
2341 ctactttctt taaaactagg gactttcaag attaaaaaaa agattgtcac tactaatttg
2401 acgcctaact tcagaagctt cactgtctac atgtgaactt ttccagaaaa actgtgccat
2461 ggacattttt cctctgggga attaacatct aaattctggt aactattaaa agacagatct
2521 ggttaattta aaaaaaaaaa aaaaaaa
//