LOCUS BC040986 3392 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens SLIT and NTRK-like family, member 4, mRNA (cDNA clone
MGC:42210 IMAGE:4811695), complete cds.
ACCESSION BC040986
VERSION BC040986.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3392)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3392)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 70 Row: l Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40217821.
FEATURES Location/Qualifiers
source 1..3392
/db_xref="H-InvDB:HIT000052477"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:42210 IMAGE:4811695"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3392
/gene="SLITRK4"
/gene_synonym="DKFZp547M2010"
/db_xref="GeneID:139065"
/db_xref="HGNC:HGNC:23502"
/db_xref="MIM:300562"
CDS 386..2899
/gene="SLITRK4"
/gene_synonym="DKFZp547M2010"
/codon_start=1
/product="SLIT and NTRK-like family, member 4"
/protein_id="AAH40986.1"
/db_xref="GeneID:139065"
/db_xref="HGNC:HGNC:23502"
/db_xref="MIM:300562"
/translation="MFLWLFLILSALISSTNADSDISVEICNVCSCVSVENVLYVNCE
KVSVYRPNQLKPPWSNFYHLNFQNNFLNILYPNTFLNFSHAVSLHLGNNKLQNIEGGA
FLGLSALKQLHLNNNELKILRADTFLGIENLEYLQADYNLIKYIERGAFNKLHKLKVL
ILNDNLISFLPDNIFRFASLTHLDIRGNRIQKLPYIGVLEHIGRVVELQLEDNPWNCS
CDLLPLKAWLENMPYNIYIGEAICETPSDLYGRLLKETNKQELCPMGTGSDFDVRILP
PSQLENGYTTPNGHTTQTSLHRLVTKPPKTTNPSKISGIVAGKALSNRNLSQIVSYQT
RVPPLTPCPAPCFCKTHPSDLGLSVNCQEKNIQSMSELIPKPLNAKKLHVNGNSIKDV
DVSDFTDFEGLDLLHLGSNQITVIKGDVFHNLTNLRRLYLNGNQIERLYPEIFSGLHN
LQYLYLEYNLIKEISAGTFDSMPNLQLLYLNNNLLKSLPVYIFSGAPLARLNLRNNKF
MYLPVSGVLDQLQSLTQIDLEGNPWDCTCDLVALKLWVEKLSDGIVVKELKCETPVQF
ANIELKSLKNEILCPKLLNKPSAPFTSPAPAITFTTPLGPIRSPPGGPVPLSILILSI
LVVLILTVFVAFCLLVFVLRRNKKPTVKHEGLGNPDCGSMQLQLRKHDHKTNKKDGLS
TEAFIPQTIEQMSKSHTCGLKESETGFMFSDPPGQKVVMRNVADKEKDLLHVDTRKRL
STIDELDELFPSRDSNVFIQNFLESKKEYNSIGVSGFEIRYPEKQPDKKSKKSLIGGN
HSKIVVEQRKSEYFELKAKLQSSPDYLQVLEEQTALNKI"
BASE COUNT 980 a 728 c 766 g 918 t
ORIGIN
1 agcggaatag tggtcgagtg tcgggaggaa ggactgcttg tgtgcggggt gggggggggg
61 tggtggagag cgggggcggg gattcagcgc gtgtatgtaa aggtgcagcc cgtgtgctag
121 gcgctgggtg cgcgcgcggt gtctgctcgg gtgcgcgcgc gcgccgctgc ccgcctgccc
181 gccggcccgc ctgctcgcct gctggggctg ctccgtgggt ttgacgggcg agcgggcgcg
241 gaggagctct gtccggaatc acatagatac catcgtggaa acagcagcgc aggtcacggc
301 gccgcgggcc ctgcaccaga cgctgggctc tagagattat ttctctttat tcagaagcat
361 acagttgttt gctgattgca agaagatgtt tctgtggctg tttctgattt tgtcagccct
421 gatttcttcg acaaatgcag attctgacat atcggtggaa atttgcaatg tgtgttcctg
481 cgtgtcagtt gagaatgtgc tctatgtcaa ctgtgagaag gtttcagtct acagaccaaa
541 tcagctgaaa ccaccttggt ctaattttta tcacctcaat ttccaaaata attttttaaa
601 tattctgtat ccaaatacat tcttgaattt ttcacatgca gtctccctgc atctggggaa
661 taataaactg cagaacattg agggaggagc ctttcttggg ctcagtgcat taaagcagtt
721 gcacttgaac aacaatgaat taaagattct ccgagctgac actttccttg gcatagagaa
781 cttggagtat ctccaggctg actacaattt aatcaagtat attgaacgag gagccttcaa
841 taagctccac aaactgaaag ttctcattct taatgacaat ctgatttcat tccttcctga
901 taatattttc cgattcgcat ctttgaccca tctggatata cgagggaaca gaatccagaa
961 gctcccttat atcggggttc tggaacacat tggccgtgtc gttgaattgc aactggaaga
1021 taacccttgg aactgtagct gtgatttatt gcccttaaaa gcttggctgg agaacatgcc
1081 atataacatt tacataggag aagctatctg tgaaactccc agtgacttat atggaaggct
1141 tttaaaagaa accaacaaac aagagctatg tcccatgggc accggcagtg attttgacgt
1201 gcgcatcctg cctccatctc agctggaaaa tggctacacc actcccaatg gtcacactac
1261 ccaaacatct ttacacagat tagtaactaa accaccaaaa acaacaaatc cttccaagat
1321 ctctggaatc gttgcaggca aagccctctc caaccgcaat ctcagtcaga ttgtgtctta
1381 ccaaacaagg gtgcctcctc taacaccttg cccggcacct tgcttctgca aaacacaccc
1441 ttcagatttg ggactaagtg tgaactgcca agagaaaaat atacagtcta tgtctgaact
1501 gataccgaaa cctttaaatg cgaagaagct gcacgtcaat ggcaatagca tcaaggatgt
1561 ggacgtatca gacttcactg actttgaagg actggatttg cttcatttag gcagcaatca
1621 aattacagtg attaagggag acgtatttca caatctcact aatttacgca ggctatatct
1681 caatggcaat caaattgaga gactctatcc tgaaatattt tcaggtcttc ataacctgca
1741 gtatctgtat ttggaataca atttgattaa ggaaatctca gcaggcacct ttgactccat
1801 gccaaatttg cagttactgt acttaaacaa taatctccta aagagcctgc ctgtttacat
1861 cttttccgga gcacccttag ctagactgaa cctgaggaac aacaaattca tgtacctgcc
1921 tgtcagtggg gtccttgatc agttgcaatc tcttacacag attgacttgg agggcaaccc
1981 atgggactgt acttgtgact tggtggcatt aaagctgtgg gtggagaagt tgagcgacgg
2041 gattgttgtg aaagaactga aatgtgagac gcctgttcag tttgccaaca ttgaactgaa
2101 gtccctcaaa aatgaaatct tatgtcccaa acttttaaat aagccgtctg caccattcac
2161 aagccctgca cctgccatta cattcaccac tcctttgggt cccattcgaa gtcctcctgg
2221 tgggccagtg cctctgtcta ttttaatctt aagtatctta gtggtcctca ttttaacggt
2281 gtttgttgct ttttgccttc ttgtttttgt cctgcgacgc aacaagaaac caacagtgaa
2341 gcacgaaggc ctggggaatc ctgactgtgg ctccatgcag ctgcagctaa ggaagcatga
2401 ccacaagacc aataaaaaag atggactgag cacagaagct ttcattccac aaactataga
2461 acagatgagc aagagccaca cttgtggctt gaaagagtca gaaactgggt tcatgttttc
2521 agatcctcca ggacagaaag ttgttatgag aaatgtggcc gacaaggaga aagatttatt
2581 acatgtagat accaggaaga gactgagcac aattgatgag ctggatgaat tattccctag
2641 cagggattcc aatgtgttta ttcagaattt tcttgaaagc aaaaaggagt ataatagcat
2701 aggtgtcagt ggctttgaga tccgctatcc agaaaaacaa ccagacaaaa aaagtaagaa
2761 gtcactgata ggtggcaacc acagtaaaat tgttgtggaa caaaggaaga gtgagtattt
2821 tgaactgaag gcgaaactgc agagttcccc tgactaccta caggtccttg aggagcaaac
2881 agctttgaac aagatctagg tcatgtaatc ttacttcata cagaggacat ttatttaatg
2941 atgaaagtgc cttttgttga cttctaactt ccaaatacta tattatcaat aggcatggag
3001 gcaggtgttt ccaagggtgt ctcattaact gtagctgcaa gatgtgtcaa gtagaagaga
3061 atttgtttaa tagattttac tacataaaac ctatactgtg gagtcctgtg gggatactgc
3121 aaactctatt gccaaaggga tgctttatac acataatact gaatttaacc tcaagaggca
3181 aatctgtttt gtaccccaat gcaaaacctt cgtccctttg tgctttgtaa agcaaactca
3241 agaaaactgg tacacctgta ccagctgggt cctttatctt gcacgtagat taagttggtg
3301 ggactggaat aatccttttg atttgtggca ttgtaacaac tccgtgtaaa gattatctga
3361 aaagtaaaaa aaaaaagaaa aaaaaaaaaa aa
//