LOCUS BC040622 1432 bp mRNA linear HUM 19-JUN-2008
DEFINITION Homo sapiens family with sequence similarity 170, member A, mRNA
(cDNA clone IMAGE:5742101).
ACCESSION BC040622
VERSION BC040622.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1432)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1432)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 88 Row: k Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 33300654.
FEATURES Location/Qualifiers
source 1..1432
/db_xref="H-InvDB:HIT000096278"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5742101"
/tissue_type="Brain, adult medulla"
/clone_lib="NIH_MGC_119"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1432
/gene="FAM170A"
/gene_synonym="ZNFD"
/db_xref="GeneID:340069"
/db_xref="HGNC:HGNC:27963"
CDS <1..1161
/gene="FAM170A"
/gene_synonym="ZNFD"
/codon_start=1
/product="family with sequence similarity 170, member A"
/protein_id="AAH40622.1"
/db_xref="GeneID:340069"
/db_xref="HGNC:HGNC:27963"
/translation="AAPSLSGLSSLAISEIQLRLLVLNLFNEFPESQEGPIYRKKWEV
DIKHLLETLLADIMKRRQKRKHLENEESQETAEKGGGMSKSQEDALQPGSTRVAKGWS
QGVGEVTSTSEYCSCVSSSRKLIHSGIQRIHRDSPQPQSPLAQVQERGETPPRSQHVS
LSSYSSYKTCVSSLCVNKEERGMKIYYMQVQMNKGVAVSWETEETLESLEKQPRMEEV
TLSEVVRVGTPPSDVSTRNLLSDSEPSGEEKEHEERTESDSLPGSPTVEDTPRAKTPD
WLVTMENGFRCMACCRVFTTMEALQEHVQFGIREGFSCHVFHLTMAQLTGNMESESTQ
DEQEEENGNEKEEEEKPEAKEEEGQPTEEDLGLRRSWSQCPGCVFHSPKDRN"
BASE COUNT 490 a 307 c 368 g 267 t
ORIGIN
1 gctgctcctt cactaagcgg tctgagttct ttagctatct cggagattca actacgttta
61 ctcgtactga atctttttaa tgaatttcct gagagccaag aagggccaat ctacaggaaa
121 aagtgggagg tggacattaa gcatcttcta gaaactcttc tagctgatat catgaaacga
181 cgacaaaaga ggaaacattt ggaaaatgaa gagtcccagg aaaccgctga gaagggagga
241 ggaatgtcaa agtcccaaga ggatgccctg cagcctggat ccactagagt ggccaaaggc
301 tggagccaag gggtgggaga agttacttct acctccgaat actgctcctg cgtttcttct
361 tcacgcaagc tcatccacag tggaatccag agaatacatc gagacagccc ccagcctcaa
421 tcacccctgg cccaggttca ggaacgagga gagactcctc cccgctcaca acatgtctcc
481 ttgtcgtcct attcatccta taagacttgt gtgtcctctc tgtgtgtaaa caaagaggaa
541 aggggcatga aaatatacta catgcaggta caaatgaaca aaggtgtggc tgtctcctgg
601 gagacagagg aaactttgga gtccttagaa aagcagccaa ggatggaaga agtgaccctt
661 tctgaggttg tgagggtagg tactcccccc tctgatgtgt ccaccagaaa cctcctgtct
721 gacagtgagc ccagtgggga ggagaaagag catgaggaaa ggacagaatc agacagcctg
781 ccaggctcac ccaccgttga ggacacaccc agagccaaga ctcctgactg gctggtgacc
841 atggagaacg gcttcaggtg catggcctgc tgccgggtgt tcaccaccat ggaagccctc
901 caggagcatg tgcagtttgg gatcagagag ggcttcagct gccacgtctt tcatctcacc
961 atggctcagc tgacaggcaa catggaatca gagagcaccc aagatgagca ggaggaggaa
1021 aatggaaatg agaaggagga ggaagagaaa ccagaagcaa aggaggagga ggggcagccc
1081 acagaagaag accttggcct gaggagatcc tggagccaat gtccaggctg tgtgtttcat
1141 tctccaaagg acaggaactg agacttatgg gccagaagat actggaagat ggtgtggcct
1201 tctcttgcaa gagggagaag aaagagccat ggagatagta gcagacaggc tgcccaaggt
1261 atgaagcaga tgagggacca gcactcagtc taacatgtaa acatcatacg taataaaggt
1321 tgtgtttcaa accttaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1381 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
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