LOCUS BC040604 2990 bp mRNA linear HUM 06-OCT-2005 DEFINITION Homo sapiens solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6, mRNA (cDNA clone MGC:43671 IMAGE:5270965), complete cds. ACCESSION BC040604 VERSION BC040604.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2990) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2990) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 74 Row: m Column: 5. FEATURES Location/Qualifiers source 1..2990 /db_xref="H-InvDB:HIT000096261" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:43671 IMAGE:5270965" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..2990 /gene="SLC1A6" /gene_synonym="EAAT4" /db_xref="GeneID:6511" /db_xref="HGNC:HGNC:10944" /db_xref="IMGT/GENE-DB:10944" /db_xref="MIM:600637" CDS 1358..2296 /gene="SLC1A6" /gene_synonym="EAAT4" /codon_start=1 /product="SLC1A6 protein" /protein_id="AAH40604.1" /db_xref="GeneID:6511" /db_xref="HGNC:HGNC:10944" /db_xref="IMGT/GENE-DB:10944" /db_xref="MIM:600637" /translation="MSSHGNSLFLRESGQRLGRVGWLQRLQESLQQRALRTRLRLQTM TLEHVLRFLRRNAFILLTVSAVVIGVSLAFALRPYQLTYRQIKYFSFPGELLMRMLQM LVLPLIVSSLVTGMASLDNKATGRMGMRAAVYYMVTTIIAVFIGILMVTIIHPGKGSK EGLHREGRIETIPTADAFMDLIRNMFPPNLVEACFKQFKTQYSTRVVTRTMVRTENGS EPGASMPPPFSVENGTSFLENVTRALGTLQEMLSFEETVPVPGSANGINALGLVVFSV AFGLVIGGMKHKGRVLRDFFDSLNEAIMRLVGIIIW" BASE COUNT 682 a 773 c 752 g 783 t ORIGIN 1 ggcatagcgc gtcccggctc cgcgccggtg cctccacggt ccggtccccg cgccggtgct 61 gcacagtccc tggcgggtcc ccgcggcccc ggccgggcgc ttcgccgggc tccggctcct 121 gcatccgggc gcagcgcgca ggccgaggcg cgggcaggcc gcccccgccg ctccggacgc 181 cgggatgtaa gaggctccga aaagcagccc acgcatctca tcagatctaa gtgtctagag 241 gtcgggagaa ccaagtggga aagacccacc ctcacccctc accttgtaga aactgggaac 301 actagaaggg acattttctg agcaggaaac ccaagagaca gggttttacg ctgtcaccca 361 agttggagtg cagtggtacg atcatagctc attgcagcct caaactcctg ggttcaagcg 421 atcctcctgc tttagcctct tgagtagcta ggactacagg cacaggccac cgtgcctggc 481 taatttttaa tttttaaaaa agagacaggg tctggctatg ttgcccaggc tggccatgaa 541 ctcctgggct caagcggttc tccagccttc acctcccaaa gtgttgggat tgcaggcatg 601 agccactgcg tctggcccac agatgctaag tgctgtctgc tcttctccag gggtcagcaa 661 attttttcag caaatggccc aagagtaaat attttgagct ttgtggcccg tacaatctct 721 gtcccaacaa ctcaactcag gcattgtagc ttgaaagcag ctgtagacaa taggtaatcc 781 atgagtgtgg ctgtgtgcca ataaaacttt atttacaaaa acaagcagta ggctgaattt 841 gactagcaga ccatagtttg tcaataccgt attatgtctt gtaaggaaga gaaaggaacc 901 agacaaaact ctagcctcgg gagttttcct gactgttcag atcttagctg aatgatctcc 961 cttggtatct acaggcaact tcctgctgtg gcttagggac tggaaacata atatcccaga 1021 gggattccct gtgtagtctg tggttcactc tttgggattt tttttttttt tttcacagca 1081 aggagaagca gcattgtggt ttcaggagat gggtccattt ggagcaggat cctaagtggg 1141 gcttggcatt gggaatttgg attagctcta gaggacgcag gatctggaaa atcagggcag 1201 atttcccatc ccttggatat ggtggggagt tgaggagggc aaggaagatc ccagaaaagc 1261 cagtggcagc aaaacacaaa ggccagggac ctacgtactg gtaaaactga gacctccaag 1321 aaacctgcag ctcgacctgg ttgaattcag atagaccatg agcagccatg gcaacagcct 1381 gttccttcgg gagagcggcc agcggctggg ccgggtgggc tggctgcagc ggctgcagga 1441 aagcctgcag cagagagcac tgcgcacgcg cctgcgcctg cagaccatga ccctcgagca 1501 cgtgctgcgc ttcctgcgcc gaaacgcctt cattctgctg acggtcagcg ccgtggtcat 1561 tggggtcagc ctggcctttg ccctgcgccc atatcagctc acctaccgcc agatcaagta 1621 cttctctttt cctggagagc ttctgatgag gatgctgcag atgctggtgt tacctctcat 1681 tgtctccagc ctggtcacag gtatggcatc cctggacaac aaggccacgg ggcggatggg 1741 gatgcgggca gctgtgtact acatggtgac caccatcatc gcggtcttca tcggcatcct 1801 catggtcacc atcatccatc ccgggaaggg ctccaaggag gggctgcacc gggagggccg 1861 gatcgagacc atccccacag ctgatgcctt catggacctg atcagaaata tgtttccacc 1921 aaaccttgtg gaggcctgct tcaaacagtt caagacgcag tacagcacga gggtggtaac 1981 caggaccatg gtgaggacag agaacgggtc tgagccgggt gcctccatgc ctcctccatt 2041 ctcagtggag aacggaacca gcttcctgga aaatgtcact cgggccttgg gtaccctgca 2101 ggagatgctg agctttgagg agactgtacc cgtgcctggc tccgccaatg gcatcaacgc 2161 cctgggcctc gtggtcttct ctgtggcctt tgggctggtc attggtggca tgaaacacaa 2221 gggcagagtc ctcagggact tcttcgacag cctcaatgag gctattatga ggctggtggg 2281 catcattatc tggtgagtcc tggtctgtgc ccacgggaag gtggagccag agctgggaag 2341 tcaggctgtg gggaagctgc cgaagggctt gctggggacc tttggtcatt catttacgta 2401 ttgggtgatt cacttaccca ctcaccaact cattcattca tgtctttctg ggatgatttc 2461 atcactagtt cacttccttg ttcatctgtt cattcattca ttcttctatg cattggttag 2521 ttcatggaat atctcactct ttcattcatt catgtccttc tgcaatgatt cattcactgc 2581 tttgttcatc tgttcattca ctcattcttc tatgcattga tgaaatcact cattcagtga 2641 tttattcatc tatactcatg cttcaatgca ttgatttact catttcctca tgcatttatt 2701 cattcatcta tgcattggtt aaatcactgg ccaactcact aactcattca ttcattcaca 2761 cttttctgca atgatttgtt cacttgttca ctcccttgct tatctgttca ttcactcatt 2821 cttcaataca ttgaccaagc cattcactga catttattca gctacattta ttctttcatg 2881 cattggtctg gatttatttg gtcattcatt tatttatttt gcaaaattaa tgtattttta 2941 attgacaaat aaaaactgta tatattttca tgtgcaaaaa aaaaaaaaaa //