LOCUS BC040560 3284 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens heat shock 70kDa protein 4-like, mRNA (cDNA clone
MGC:41835 IMAGE:5270824), complete cds.
ACCESSION BC040560
VERSION BC040560.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3284)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3284)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 74 Row: l Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31541940.
FEATURES Location/Qualifiers
source 1..3284
/db_xref="H-InvDB:HIT000052430"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:41835 IMAGE:5270824"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3284
/gene="HSPA4L"
/gene_synonym="APG-1"
/gene_synonym="Osp94"
/db_xref="GeneID:22824"
/db_xref="HGNC:HGNC:17041"
CDS 254..2773
/gene="HSPA4L"
/gene_synonym="APG-1"
/gene_synonym="Osp94"
/codon_start=1
/product="heat shock 70kDa protein 4-like"
/protein_id="AAH40560.1"
/db_xref="GeneID:22824"
/db_xref="HGNC:HGNC:17041"
/translation="MSVVGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACISLGSR
TRAIGNAAKSQIVTNVRNTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSAGVK
VRYLEEERPFAIEQVTGMLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAA
QVAGLNCLRLMNETTAVALAYGIYKQDLPPLDEKPRNVVFIDMGHSAYQVLVCAFNKG
KLKVLATTFDPYLGGRNFDEALVDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKL
MSANASDLPLNIECFMNDLDVSSKMNRAQFEQLCASLLARVEPPLKAVMEQANLQRED
ISSIEIVGGATRIPAVKEQITKFFLKDISTTLNADEAVARGCALQCAILSPAFKVREF
SITDLVPYSITLRWKTSFEDGSGECEVFCKNHPAPFSKVITFHKKEPFELEAFYTNLH
EVPYPDARIGSFTIQNVFPQSDGDSSKVKVKVRVNIHGIFSVASASVIEKQNLEGDHS
DAPMETETSFKNENKDNMDKMQVDQEEGHQKCHAEHTPEEEIDHTGAKTKSAVSDKQD
RLNQTLKKGKVKSIDLPIQSSLCRQLGQDLLNSYIENEGKMIMQDKLEKERNDAKNAV
EEYVYDFRDRLGTVYEKFITPEDLSKLSAVLEDTENWLYEDGEDQPKQVYVDKLQELK
KYGQPIQMKYMEHEERPKALNDLGKKIQLVMKVIEAYRNKDERYDHLDPTEMEKVEKC
ISDAMSWLNSKMNAQNKLSLTQDPVVKVSEIVAKSKELDNFCNPIIYKPKPKAEVPED
KPKANSEHNGPMDGQSGTETKSDSTKDSSQHTKSSGEMEVD"
BASE COUNT 1092 a 606 c 720 g 866 t
ORIGIN
1 gccggttgga ggcggccgaa ccgcagtagg gaaagaccca ggctgcggga cgcggtgcag
61 gctgcggcgc tgacggcctc tgctccttcc gcgggtttcc gactccctgc cctagatttt
121 ctgcttagcg acttggggtc ccctctcgtt tgcttctggt aggagtcgca atcccagcag
181 caatagccca gaagaggaca cggttcccgt accgaagggt tcagtaccag cagcccgacc
241 atcacgcggc gggatgtctg tggttggcat tgacctcggc tttctcaact gctacattgc
301 tgtcgcgaga agtggcggca tcgagaccat cgccaatgag tacagcgaca ggtgtacccc
361 ggcctgtata tcattgggat caagaactcg agccattgga aatgcagcaa agagccagat
421 agtcacgaac gtaagaaata caattcatgg cttcaaaaag cttcatgggc gatcatttga
481 tgatcccatt gtgcaaactg aaaggatcag gcttccctat gaactgcaga aaatgcctaa
541 tggaagtgca ggagttaagg tgcggtactt agaggaagag agaccttttg caattgagca
601 agttactgga atgctgttag ccaagcttaa agagacttca gaaaatgctt tgaagaaacc
661 agtggctgac tgtgtgattt caattcctag cttttttact gatgccgaga gaagatctgt
721 gatggctgca gcccaggttg caggcttaaa ttgtttaagg ttgatgaatg aaactactgc
781 agttgcactg gcgtatggaa tttataaaca ggatcttccc ccattagatg agaaaccaag
841 aaatgtagta tttattgata tgggacattc tgcctatcag gtcttggttt gtgcttttaa
901 caaaggaaaa cttaaagtct tggctactac ctttgatcca tatttgggtg gcaggaactt
961 tgatgaggct ttagtagact acttctgtga tgagttcaag accaaatata agataaatgt
1021 gaaagaaaac tctcgggcct tgttgcgttt atatcaggaa tgtgaaaaac taaagaagct
1081 aatgagtgca aatgcatcag atcttccatt gaacattgag tgtttcatga atgaccttga
1141 tgtttctagt aaaatgaaca gggctcaatt tgaacaactg tgtgcttccc ttttggccag
1201 ggttgaacca cctttaaaag cagtaatgga acaagctaac ttacaacgtg aagacattag
1261 tagtatagaa attgtaggag gagcaacacg aattcctgca gtgaaagaac aaatcactaa
1321 attctttctt aaagacataa gtaccacatt aaatgctgat gaagctgttg caagaggatg
1381 tgcgttacag tgtgcgattc tctcaccagc atttaaagtg cgtgaatttt ccataacaga
1441 ccttgttccc tattcaatca cattaaggtg gaagacctct tttgaagatg gaagtgggga
1501 atgtgaagtt ttctgtaaga accatcctgc cccattctca aaagtcatta ctttccacaa
1561 gaaggaacca tttgaactag aagcatttta tactaattta catgaagtgc cttatcctga
1621 tgcaagaatt gggagcttca ctattcagaa tgtttttcca cagtctgatg gtgatagttc
1681 caaagtgaag gttaaagttc gtgttaacat ccatggaatc ttcagtgtgg ctagcgcatc
1741 agtaattgag aagcaaaatt tggaaggcga tcacagtgat gctccaatgg agacagaaac
1801 ttcatttaaa aatgaaaaca aagataatat ggataaaatg caggttgatc aagaagaagg
1861 gcatcaaaaa tgtcatgctg aacacactcc agaagaggaa attgatcata caggagccaa
1921 aacaaagtca gctgtctcag acaaacaaga ccgattaaat cagacactta aaaaaggaaa
1981 agtcaaaagt attgatctac cgatccagag tagcctatgt agacaactag gccaagatct
2041 tctcaacagc tacattgaaa atgaggggaa gatgatcatg caagataagt tagagaaaga
2101 aagaaatgat gctaagaatg ccgttgaaga atatgtatat gattttagag acaggctggg
2161 cactgtctat gaaaaattca tcactccaga agacttgagt aaactgtctg cagtattgga
2221 agacacagaa aattggcttt atgaagacgg agaggaccaa cctaaacaag tttatgtgga
2281 taagcttcaa gaactaaaga aatacggcca gcctattcaa atgaagtaca tggagcatga
2341 agagagacca aaagccttaa atgacttggg aaaaaagatc caacttgtca tgaaagtgat
2401 agaagcttat agaaacaagg atgaaagata tgatcatctg gatcctactg aaatggaaaa
2461 ggttgaaaaa tgtatcagtg atgccatgag ttggctgaat agtaagatga atgcacagaa
2521 caaactaagt ctcactcaag atcctgtggt aaaagtttca gaaatagtag caaagtcaaa
2581 ggaactggat aatttctgta accccatcat ttacaagccc aaaccaaaag cagaagttcc
2641 tgaagacaaa ccaaaagcta atagtgaaca caatggccca atggatggac agagtggaac
2701 tgaaactaaa tcagattcaa caaaagacag ctcacagcat actaaatcct ctggagagat
2761 ggaagtggac taagtcttaa ttttaccttc acattaattc aaaccgtgca agtaaccacg
2821 gggtccatct tttacatctg gtacacacaa cagacgctca gttgttctta accacttttg
2881 tcatttgttt tttggagtag ttttgaaaag tgttttatat tgagtgcact tctgttcatt
2941 tccattgctg cttatatgca gtgttagccg aattagattt acaagacaat ctaagctttc
3001 cggataattt tatatatcaa acatacagga tggatacata gttggcaaca gtctacctta
3061 tttaaagctt ctactgggat aaacctcaat tcctttattc aggaaaggat actttattgc
3121 attattgttg cagaagcata gatttaattg catctttatt ttgaaaaaca aatgaaaatt
3181 gatggggttt aaagctacag aggcactgac ctttttctag ttattgtatt gctacaattt
3241 aaatattaaa acaaataaga gctttcccaa aaaaaaaaaa aaaa
//