LOCUS BC040552 4973 bp mRNA linear HUM 04-AUG-2008
DEFINITION Homo sapiens synuclein, alpha interacting protein, mRNA (cDNA clone
MGC:39814 IMAGE:5298588), complete cds.
ACCESSION BC040552
VERSION BC040552.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4973)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4973)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 63 Row: o Column: 7.
FEATURES Location/Qualifiers
source 1..4973
/db_xref="H-InvDB:HIT000096217"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39814 IMAGE:5298588"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4973
/gene="SNCAIP"
/gene_synonym="SYPH1"
/db_xref="GeneID:9627"
/db_xref="HGNC:HGNC:11139"
/db_xref="MIM:603779"
CDS 1429..4479
/gene="SNCAIP"
/gene_synonym="SYPH1"
/codon_start=1
/product="SNCAIP protein"
/protein_id="AAH40552.1"
/db_xref="GeneID:9627"
/db_xref="HGNC:HGNC:11139"
/db_xref="MIM:603779"
/translation="MEAPEYLDLDEIDFSDDISDNRSQGNRLQKLGLEDTDREDAMGF
GSHRAKLTVVAALGACHCPENEYSVTSLKTIPELCRRCDTQNEDRSVSSSSWNCGIST
LITNTQKPTGIADVYSKFRPVKRVSPLKHQPETLENNESDDQKNQKVVEYQKGGESDL
GPQPQELGPGDGVGGPPGKSSEPSTSLGELEHYDLDMDEILDVPYIKSSQQLASFTKV
TSEKRILGLCTTINGLFGKACSTGSSESSSSNMAPFCVLSPVKSPHLRKASAVIHDQH
KLSTEETEISPPLVKCGSAYEPENQSKDFLNKTFSDPHGRKVEKTTPDCQLRAFHLQS
SAAESKPEEQVSGLNRTSSQGPEERSEYLKKVKSILNIVKEGQISLLPHLAADNLDKI
HDENGNNLLHIAASQGHAECLQHLTSLMGEDCLNERNTEKLTPAGLAIKNGQLECVRW
MVSETEAIAELSCSKDFPSLIHYAGCYGQEKILLWLLQFMQEQGISLDEVDQDGNSAV
HVASQHGYLGCIQTLVEYGANVTMQNHAGEKPSQSAERQGHTLCSRYLVVVETCMSLA
SQVVKLTKQLKEQTVERVTLQNQLQQFLEAQKSEGKSLPSSPSSPSSPASRKSQWKSP
DADDDSVAKSKPGVQEGIQVLGSLSASSRARPKAKDGDSDKILRQLLGKEISENVCTQ
EKLSLEFQDAQASSRNSKKIPLEKRELKLARLRQLMQRSLSESDTDSNNSEDPKTTPV
RKGDRPRPQPIVESVESMDSAESLHLMIKKHTLASGGRRFPFSIKASKSLDGHSPSPT
SESSEPDLESQYPGSGSIPPNQPSGDPQQPSPDSTAAQKVATSPKSALKSPSSKRRTS
QNLKLRVTFEEPVVQMEQPSLELNGEKDKDKGRTLQRTSTSNESGDQLKRPFGAFRSI
METLSGNQNNNNNYQAANQLKTSTLPLTSLGRKTDAKGNPASSASKGKNKAEMYSSCI
NLSSNMLIEEHLCNDTRHNDINRKMKKSYSIKHIAEPESKELFL"
BASE COUNT 1525 a 1103 c 1131 g 1214 t
ORIGIN
1 gcttctgccg ctgcggtccg tcggtcggtc agtcagtccc ttcgcgctcc tgagccgccg
61 gcgcgccggg cgccccggaa aagagtgcct gagagtgcca gaggcttggt ggaagggcag
121 acgagagaag aggaggcatt gtattggcca ctgggacaac tgcagactca ctcttacctg
181 taaagaagca gttaatgttg gggaatgtag tcaggattgg aaaaccacgg ggatttctgc
241 acattataat tgagaatgta aatattctta aagtggcacc ctgaaagaga caagcattga
301 aaccagacaa aataaattgg atcatgaaca gaatgagaca tcttaaagga gatagcatgt
361 ggaggcctgc tgggaagtag aggcaaattc cagatgccta ggagccttag tctaaggtgg
421 ggccatccaa cccacagaaa taaatatggg cagtggccca agacttccta taatgagctg
481 cacctgttgt aagtcttgtg ttcttgccta tagaataaag aacctcacta ccatcctgca
541 agtgcaaatt gaaagattcc tgttgtgatg ccatgagtta ttatccgctg gttatattct
601 attggaatgg ctacactcaa ctggatattg ctgtctatat tgttggagca cctcaaacag
661 gggtgcaatg gttatttgtt aatttactta attaagacat gttcatccac attttatagt
721 ttcatttatt taaagatcca tttggtcccc agcttcgatg catgtttctc tgcttcatct
781 ccccatattt ccatgttcct gctgatgttt ataccatatc ctggcaccca gcatcatctg
841 tgtgttgttc accaaggccg tgggaacaga gtctgtaaat caatagttca tcacggagta
901 cagatttcat gaaaagaaat tggattggaa gaaagtctcc tagtgaacac gctagtatcc
961 aaagagtctg gattgtatca gaatccatca cagtaggaga gaatgttgtt ttgagtaatt
1021 tccaagcaga gtacatatat tttcctctga aaatctttgt aaattgaaga aaagtgacat
1081 ttttatacca agcaatttgt ttgataacct attttcagat ttctacaaat aataaaattt
1141 ctgattttaa atatttttta caaatacaag ttggttttct tttcattgta agccttactg
1201 tgatttcaga agaattttta acatttgcta aatggataat ctcatttaaa catggaagta
1261 acatcctaat cctttcttgg atggactctg tatctattgt aattaagact ttaaaaatgg
1321 tatatacata tgggaaaaaa aggagaggaa acaggaaaat taaatcaagt gatgggtttg
1381 aggaatttat aagtatttga ccgtactcaa aatgtgcaag gaagaataat ggaagcccct
1441 gaataccttg atttggatga aattgacttt agtgatgaca tatctgacaa taggagtcaa
1501 gggaacaggc tacaaaagct tggattggag gacacagaca gggaagatgc aatgggcttt
1561 ggttcccata gggccaaact gacagtagtt gctgccctgg gagcttgcca ttgtcctgag
1621 aatgagtatt cagtcacatc actcaagacg atcccagaac tgtgccgaag atgtgatacg
1681 caaaacgaag acagatcagt ttctagctct agctggaatt gtggcatctc aactcttatt
1741 acaaacacgc aaaagcccac aggaatcgct gatgtgtaca gtaagttccg cccagtgaag
1801 cgggtttcgc cactgaaaca tcagccagag actctggaga acaatgaaag tgatgaccaa
1861 aagaaccaga aagtggttga gtaccagaaa gggggtgagt ctgacctggg cccccagcct
1921 caggagcttg gccctggaga tggagtgggc ggcccaccag gtaagagctc tgagcccagc
1981 acatcgctgg gtgaactgga gcactacgac ctcgacatgg atgagattct ggatgtgcct
2041 tatattaaat ccagtcagca gcttgcctct tttaccaagg tgacttcaga aaaaagaatt
2101 ttgggcttat gcacaaccat caatggcctt tttggcaaag cctgctctac aggaagttct
2161 gagagctcat catccaacat ggcaccattt tgtgttcttt ctcccgtgaa aagccctcac
2221 ttgagaaaag catcagctgt catccacgac cagcacaagc tgtccactga agaaaccgag
2281 atctcacctc ctctggttaa atgtggctct gcatatgagc ctgaaaacca gagtaaagac
2341 ttcctaaaca agacatttag tgatcctcat ggtcgaaaag ttgagaagac aacaccagac
2401 tgccagctca gggccttcca cctacaatcc tcagcagcag aatccaaacc agaagagcag
2461 gtcagtggcc taaaccggac cagctcccaa ggcccagaag aaaggagtga gtatctgaaa
2521 aaagtgaaaa gcatcttgaa cattgttaaa gaaggacaga tctctctcct gccacaccta
2581 gctgcagaca atctagacaa aattcacgac gaaaatggaa acaatctatt acatattgcg
2641 gcgtcacagg gacacgcaga gtgtctacag cacctcactt ctttgatggg agaagactgc
2701 ctcaatgagc gcaacactga gaagttgact ccagcaggcc tggccattaa gaatggtcag
2761 ttggagtgcg tacgctggat ggtgagcgaa acagaagcca ttgcagaact gagttgttct
2821 aaggattttc caagccttat tcattacgca ggttgctatg gccaggaaaa gattcttctg
2881 tggcttcttc agtttatgca agagcagggc atctcgttgg atgaagtaga ccaggatggc
2941 aacagtgccg ttcacgtagc ctcacagcat ggctaccttg gatgcataca gaccttggtt
3001 gaatatggag caaatgtcac catgcagaac cacgctgggg aaaagccctc ccagagcgcc
3061 gagcggcagg ggcacaccct gtgctccagg tacctggtgg tggtggagac ctgcatgtcg
3121 ctggcctctc aagtggtgaa gttaaccaag cagctaaagg aacaaacagt agaacgtgtc
3181 acgctgcaga accaactcca acaatttcta gaagcccaga aatcagaggg caagtcactc
3241 ccttcttcac ccagttcacc atcctcacct gcctccagaa agtcccagtg gaaatctcca
3301 gatgcagatg atgattctgt agccaaaagc aagccaggag tccaagaggg gattcaggtt
3361 cttggaagcc tgtcagcctc cagccgggct agacccaaag caaaagatgg agattctgat
3421 aaaatcttac gccagttatt gggaaaggaa atctcagaaa atgtctgcac ccaggaaaaa
3481 ctgtccttgg aattccagga tgctcaggct tcctctagaa attctaaaaa gatcccactg
3541 gagaagaggg aactgaagtt agccaggctg agacagctga tgcagaggtc actgagtgag
3601 tctgacacag actccaacaa ctctgaggac cccaagacta ccccagtgag gaagggtgac
3661 cgaccaaggc cgcagcccat tgtagaaagc gtagagagta tggacagcgc agaaagcctg
3721 cacctgatga ttaagaaaca caccttggca tcagggggac gcaggtttcc tttcagcatc
3781 aaggcctcca aatccctgga tggccacagc ccatctccca cctcagagag cagcgaacca
3841 gacttagaat cccagtatcc aggctcaggg agtattcctc caaaccagcc ctctggtgac
3901 cctcagcagc ccagccctga cagtactgct gcccagaaag ttgccacaag tcccaagagt
3961 gccctcaagt ctccatcttc caagcgtagg acatctcaga acttaaaact gagagttacc
4021 tttgaggagc ctgtggtgca gatggagcag cctagccttg aactgaatgg agaaaaagac
4081 aaagataagg gcaggactct ccagcggacc tccacaagta acgaatcggg ggatcaactg
4141 aaaaggcctt ttggagcctt tcgatctatc atggagacac taagtggcaa ccaaaacaat
4201 aataataact accaggcagc caaccagctg aaaacctcta cattgccctt gacctcactt
4261 gggaggaaga cagatgccaa gggaaaccct gccagctccg ctagcaaagg aaagaataag
4321 gcagaaatgt acagcagctg catcaatctt tcctctaaca tgctgattga agagcatctg
4381 tgtaacgaca cacggcataa tgacatcaat agaaaaatga agaaatccta cagcataaag
4441 cacattgctg agccagagtc aaaagaactc ttcttgtaaa tcacttttta aattttctct
4501 cactgatgcc ctttggaaat tattggaaat ttctggacta tcctctttgg aaagagaacc
4561 atgaaaacaa tgcctcacca gcagaagaac agaatatcag gatgccttaa atttatagta
4621 gtagactgta aaagattcat tttggggtga tatctgtata tataacttgt ttttttaaaa
4681 gatgccgttt aaaagcatga ttgggaaaat gtatgttttt taagagtaga ttgattcacc
4741 ctacccacag gacattcacc aagccactga taccatttta tatttcatca attgcatgag
4801 tatttgctaa tgttgattga acctcccttt ccccataatg tgggcagatt tggctcagct
4861 ccttcatgag atcaggtcag tggtattgtt tctgtcaaga gtgttttttc tgtcatttct
4921 actttttgta taaaggaaat aaaacaatgt taacagccaa aaaaaaaaaa aaa
//