LOCUS BC040543 4654 bp mRNA linear HUM 30-JUL-2005
DEFINITION Homo sapiens protein tyrosine phosphatase, receptor type, M, mRNA
(cDNA clone IMAGE:5271160), complete cds.
ACCESSION BC040543
VERSION BC040543.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4654)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4654)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 63 Row: h Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..4654
/db_xref="H-InvDB:HIT000096211"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5271160"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4654
/gene="PTPRM"
/gene_synonym="hR-PTPu"
/gene_synonym="R-PTP-MU"
/gene_synonym="RPTPM"
/gene_synonym="RPTPU"
/db_xref="GeneID:5797"
/db_xref="MIM:176888"
CDS 3296..4135
/gene="PTPRM"
/gene_synonym="hR-PTPu"
/gene_synonym="R-PTP-MU"
/gene_synonym="RPTPM"
/gene_synonym="RPTPU"
/codon_start=1
/product="PTPRM protein"
/protein_id="AAH40543.1"
/db_xref="GeneID:5797"
/db_xref="MIM:176888"
/translation="MNKLDPQTNSSQIKEEFRTLNMVTPTLRVEDCSIALLPRNHEKN
RCMDILPPDRCLPFLITIDGESSNYINAALMDSYKQPSAFIVTQHPLPNTVKDFWRLV
LDYHCTSVVMLNDVDPAQLCPQYWPENGVHRHGPIQVEFVSADLEEDIISRIFRIYNA
ARPQDGYRMVQQFQFLGWPMYRDTPVSKRSFLKLIRQVDKWQEEYNGGEGRTVVHCLN
GGGRSGTFCAISIVCEMLRHQRTVDVFHAVKTLRNNKPNMVDLLDQYKFCYEVALEYL
NSG"
BASE COUNT 1296 a 1045 c 1001 g 1312 t
ORIGIN
1 accagaatta acaatgaatc tttcagcacc acactcaatt tcaattggaa acactgctca
61 gtcttcacct ttatttagga tgaatgtttt ggttttgttt tccttttttt cttcttcagt
121 tgatctatcc aagatctcag ccaaaccttg caactgtgtc atagttagaa atccaactgc
181 ctgactagag cttgtttaag ggaaaagaat tcagaatatt cagcaccttg ctatgttttt
241 tttttctttt tttccttttc tttttgttgt tgttagaaca aagttgagac aatttgatat
301 actgatgggg attcttcttg ctagcctagc ttcagtctgg cttttttttc cctcatgcat
361 gctgacctgg aaatcctcct ttgccttagc tgcgataatc gtgactcagc ttacaacacc
421 ttacattcgc atcgcccccg ctgcaggcga cggccaacta acaggagctg ccactccgaa
481 accagtccca gaacccgaga aacagacaga ccatacagtt aaaattgctg gagtcatcgc
541 gggcatcttg ctgttcgtga ttatatttct tggagttgtg ttggtaatga agaaaaggaa
601 actggccaag aagcggaaag agaccatgag cagcacccga caggagatga ctgtgatggt
661 gaactcaatg gacaagagct atgctgagca gggcacaaac tgcgacgagg ctttctcatt
721 catggacacg cacaatctga atgggagatc tgtgtcttca ccatcgtcct tcacaatgaa
781 aacaaataca ctgagcacat cggtgcctaa ttcctattac ccagagcttc tttgaagggc
841 agtctgcacc atgggactcg gctaagaaag atgagaacag aatgaagaac agatacggga
901 atatcattgc atacgatcat tcccgagtga ggctgcagac aatagaagga gacacaaact
961 cagactatat caatggcaat tatatcgatg gttatcatcg acccaatcat tacattgcta
1021 cccaagggcc aatgcaggaa accatctatg acttctggag gatggtgtgg cacgaaaaca
1081 ctgcaagtat catcatggtg accaatcttg tggaagtggg aagggtcaaa tgctgcaaat
1141 actggccaga tgacacagag atatataaag acattaaagt taccctaata gaaacagaac
1201 tactggcaga atatgtgata agaacatttg ctgttgaaaa gagaggtgtg catgaaatcc
1261 gagagatcag acagtttcac ttcactggct ggccggatca tggggtcccc taccatgcca
1321 ccggcctgct gggattcgtg cggcaagtca agtccaagag cccgcccagt gcaggcccac
1381 tggtggtgca ctgcagtgct ggtgcaggga ggactggctg tttcatcgtc attgatatca
1441 tgttggacat ggccgaaagg gaaggggtcg tagacatcta caactgcgtc agggagctgc
1501 ggtcacggag ggtgaacatg gtgcaaacag aggtactccc gctcatcacc tagcctgggg
1561 ccttggtccc tgggctccct cctgcatctc cccatttcag ggccaagggc acaaggaatc
1621 caggcaatta tctgttcaag tgatctacct ggcattccct gctccttccc tccctccctc
1681 ccttccccct ttttgttttt cctctcataa acaaaccaaa caaacccagg agttttccag
1741 gtaacagaat caagagccca aatttgcaca cttttctgta ttaagggacc caaaaaagtc
1801 tctgttaagt gctcagactt tcaataccat ttccttttat tatctctttt aaactagctg
1861 gtaaccagag caagaccgct cctgagaata gtggctgaag ggttatctct gtgcactttg
1921 ttcttctccc agggtcctgg gaagaacaga agcctcctga ccctaaaaat tctgcccagt
1981 gtctggcgtc ctggggattt gcccattttg tgaagtactg tatactaact agtaactctg
2041 taagtggaaa ttcaaggtat atcgggaatt tccatttttt cagaagcaat gttacatcct
2101 gctcttagga cattcgtatt tttactcata tttgattgtt ttaagtaggc atcacaccga
2161 ccacctggaa aatgattcat gaagtgaagt gaagaagaag taagaatccc ttacatttag
2221 atggtgcatt taagtttatg aaagcctctg ggaaacctaa tcccattttt ttagctaaca
2281 taaaaataac agaaacttta aatgctgctt tcatgggttc ttttccttag aaaggggata
2341 ctgtgtttga aagataataa tcgtaataat ttatctttta atgtacttta tagtcaatca
2401 aatgttgcca ctcgcatttc tcacttggat cttccatttt caggtgttgt ttactggtag
2461 tgtgctgttt ttgggaatca atctgttgga caagaggttg ttgaaaaaaa ataattaaag
2521 gtcatattta tgtatagaaa aaaccgaatt aactgtaata agaggctttt taaacttccc
2581 atataactaa agattaataa taaatatgat aagactctac caatgaattt taagaaaagt
2641 cagtgccaaa tcagaattag aggccccata tttacactgt gaactcattg aagatatata
2701 tgagaacagc tctctgtact tctaagaggt ttcataatca tattaacttt tatgttctga
2761 aataagaact tctaagtact tttatgtttt gaattaagaa cttccagact tcttgtcttc
2821 acagtaatgc caagtttttc tggaccttct ttgcactatt attttgacca gcaaatccta
2881 ccatagacaa aattctgctc attcctcatg tgaaatactg agttccaagt gagtaggatc
2941 agaatgacag aggtcttcag ccacagtttt catggtgctg cagtgcgtgt ggtggtttgt
3001 attgggtccg attggtttta atcaatctgt gtaatatttg gcattgcacc ccagtctcct
3061 agcacttgag cccttggacc gtgtttctct ctggaggaac tgtctccact ctcttgatga
3121 tgtggggcta aaattgatac cgtctttcct ccttctctgg ttctctaaag ttagtaactc
3181 gttccatctc cttctccagg agcagtatgt gtttatccac gatgcgatcc tggaagcctg
3241 tctttgtggg gacacctctg tgcctgcttc ccaagttagg tctctgtatt atgacatgaa
3301 caaactggat ccacagacaa actcaagcca gattaaagag gaattccgga cgctaaacat
3361 ggtgacacca acgctgcgag tagaggactg cagcatcgca ctgttgcccc ggaaccatga
3421 gaaaaaccgg tgcatggaca tcctgccccc agaccgctgc ctgcccttcc tcatcaccat
3481 cgatggggag agcagcaact acatcaatgc tgccctcatg gacagctata aacagccttc
3541 agcttttata gtcacccagc atcctttgcc aaacacagtg aaagactttt ggagactggt
3601 cctggattat cactgcacat ccgtagttat gctaaatgat gtggatcctg cccagttgtg
3661 tccacagtac tggccagaaa acggagtaca cagacacggc cccatccagg tggaatttgt
3721 ctctgctgac ctggaagagg acatcatcag caggatattc cgcatttaca atgccgccag
3781 accccaagat ggatatcgga tggtgcagca attccagttc ctgggctggc cgatgtacag
3841 ggacacacca gtgtctaagc gctccttctt gaagctcatt cgccaggtgg acaagtggca
3901 agaggaatac aatggcgggg aaggccgcac cgttgtgcac tgcttgaacg ggggaggccg
3961 cagtgggacg ttctgcgcca tcagcatcgt atgtgagatg ctccggcacc agagaaccgt
4021 ggatgtcttt cacgctgtga agacactgag gaacaacaag cccaacatgg tcgacctcct
4081 ggatcagtac aagttctgct acgaggtggc cctggaatac ttgaattctg gctgatggtg
4141 taaacagctc tgcaaacaat ccctttcata ccacaaagcc aagacgttcc atggtatttg
4201 tgcaaaagag atgaagactt ctcaatatgc ttattttgct ttgcataatt ggctcttttt
4261 aagagcccaa gaaagtgttt ctaaaattgc ttgcactgcc caatcccagt aatgctgctg
4321 cctgacagaa acacacacac agccacagtt gccaaatccc gtactccttg ccaccggctt
4381 cctagagcag cgtagacagc tggtaaactg aagagcacaa ctatattctt atgaaggaat
4441 ttgtaccttt ggggtattat tttgtggccc gtgaccctcg ttattgttac agctgagtgt
4501 atgtttttgt tctgtggaga atgctatctg gcattatggt aatatattat tttaggtaat
4561 atttgtactt taacatgttg cataatatat gcttatgtag ctttccagga ctaacagata
4621 aatgtgtaat gaacaaagaa aaaaaaaaaa aaaa
//