LOCUS BC040479 1674 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens major histocompatibility complex, class I, E, mRNA
(cDNA clone MGC:32811 IMAGE:4696327), complete cds.
ACCESSION BC040479
VERSION BC040479.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1674)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1674)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 41 Row: j Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..1674
/db_xref="H-InvDB:HIT000096184_10"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:32811 IMAGE:4696327"
/tissue_type="Lung"
/clone_lib="NIH_MGC_77"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1674
/gene="HLA-E"
/gene_synonym="EA1.2"
/gene_synonym="EA2.1"
/gene_synonym="HLA-6.2"
/gene_synonym="MHC"
/db_xref="GeneID:3133"
/db_xref="HGNC:HGNC:4962"
/db_xref="MIM:143010"
CDS 21..1097
/gene="HLA-E"
/gene_synonym="EA1.2"
/gene_synonym="EA2.1"
/gene_synonym="HLA-6.2"
/gene_synonym="MHC"
/codon_start=1
/product="major histocompatibility complex, class I, E"
/protein_id="AAH40479.1"
/db_xref="GeneID:3133"
/db_xref="HGNC:HGNC:4962"
/db_xref="MIM:143010"
/translation="MVDGTLLLLLSEALALTQTWAGSHSLKYFHTSVSRPGRGEPRFI
SVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTL
RGYYNQSEAGSHTLQWMHGCELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTA
AQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDH
EATLRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQ
RYTCHVQHEGLPEPVTLRWKPASQPTIPIVGIIAGLVLLGSVVSGAVVAAVIWRKKSS
GGKGGSYSKAEWSDSAQGSESHSL"
BASE COUNT 379 a 466 c 512 g 317 t
ORIGIN
1 aggactcaga ggctgggatc atggtagatg gaaccctcct tttactcctc tcggaggccc
61 tggcccttac ccagacctgg gcgggctccc actccttgaa gtatttccac acttccgtgt
121 cccggcccgg ccgcggggag ccccgcttca tctctgtggg ctacgtggac gacacccagt
181 tcgtgcgctt cgacaacgac gccgcgagtc cgaggatggt gccgcgggcg ccgtggatgg
241 agcaggaggg gtcagagtat tgggaccggg agacacggag cgccagggac accgcacaga
301 ttttccgagt gaacctgcgg acgctgcgcg gctactacaa tcagagcgag gccgggtctc
361 acaccctgca gtggatgcat ggctgcgagc tggggcccga cgggcgcttc ctccgcgggt
421 atgaacagtt cgcctacgac ggcaaggatt atctcaccct gaatgaggac ctgcgctcct
481 ggaccgcggt ggacacggcg gctcagatct ccgagcaaaa gtcaaatgat gcctctgagg
541 cggagcacca gagagcctac ctggaagaca catgcgtgga gtggctccac aaatacctgg
601 agaaggggaa ggagacgctg cttcacctgg agcccccaaa gacacacgtg actcaccacc
661 ccatctctga ccatgaggcc accctgaggt gctgggccct gggcttctac cctgcggaga
721 tcacactgac ctggcagcag gatggggagg gccataccca ggacacggag ctcgtggaga
781 ccaggcctgc aggggatgga accttccaga agtgggcagc tgtggtggtg ccttctggag
841 aggagcagag atacacgtgc catgtgcagc atgaggggct acccgagccc gtcaccctga
901 gatggaagcc ggcttcccag cccaccatcc ccatcgtggg catcattgct ggcctggttc
961 tccttggatc tgtggtctct ggagctgtgg ttgctgctgt gatatggagg aagaagagct
1021 caggtggaaa aggagggagc tactctaagg ctgagtggag cgacagtgcc caggggtctg
1081 agtctcacag cttgtaaagc ctgagacagc tgccttgtgt gcgactgaga tgcacagctg
1141 ccttgtgtgc gactgagatg caggatttcc tcacgcctcc cctatgtgtc ttaggggact
1201 ctggcttctc tttttgcaag ggcctctgaa tctgtctgtg tccctgttag cacaatgtga
1261 ggaggtagag aaacagtcca cctctgtgtc taccatgacc cccttcctca cactgacctg
1321 tgttccttcc ctgttctctt ttctattaaa aataagaacc tgggcagagt gcggcagctc
1381 atgcctgtaa tcccagcact tagggaggcc gaggagggca gatcacgagg tcaggagatc
1441 gaaaccatcc tggctaacac ggtgaaaccc cgtctctact aaaaaataca aaaaattagc
1501 tgggcgcaga ggcacgggcc tgtagtccca gctactcagg aggcggaggc aggagaatgg
1561 cgtcaacccg ggaggcggag gttgcagtga gccaggattg tgcgactgca ctccagcctg
1621 ggtgacaggg tgaaacgcca tcccaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
//