LOCUS BC040352 4331 bp mRNA linear HUM 30-MAR-2004
DEFINITION Homo sapiens nucleoporin 188kDa, mRNA (cDNA clone IMAGE:3861295),
partial cds.
ACCESSION BC040352
VERSION BC040352.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4331)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4331)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (27-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 21 Row: f Column: 12.
FEATURES Location/Qualifiers
source 1..4331
/db_xref="H-InvDB:HIT000096139"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3861295"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_66"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..4331
/gene="NUP188"
/gene_synonym="KIAA0169"
/db_xref="GeneID:23511"
CDS <1..3884
/gene="NUP188"
/gene_synonym="KIAA0169"
/codon_start=3
/product="NUP188 protein"
/protein_id="AAH40352.1"
/db_xref="GeneID:23511"
/translation="GKSTAKKVYSFLDKMSFYNELYKHKPHDVISHEDGTLWRRQTPK
LLYPLGGQTNLRIPQGTVGQVMLDDRAYLVRWEYSYSSWTLFTCEIEMLLHVVSTADV
IQHCQRVKPIIDLVHKVISTDLSIADCLLPITSRIYMLLQRLTTVISPPVDVIASCVN
CLTVLAARNPAKVWTDLRHTGFLPFVAHPVSSLSQMISAEGMNAGGYGNLLMNSEQPQ
GEYGVTIAFLRLITTLVKGQLGSTQSQGLVPCVMFVLKEMLPSYHKWRYNSHGVREQI
GCLILELIHAILNLCHETDLHSSHTPSLQFLCICSLAYTEAGQTVINIMGIGVDTIDM
VMAAQPRSDGAEGQGQGQLLIKTVKLAFSVTNNVIRLKPPSNVVSPLEQALSQHGAHG
NNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGNDAAAIRDAFLTRLQ
SKIEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGSDGSKEFSLGMWSCLHAVLE
LIDSQQQDRYWCPPLLHRAAIAFLHALWQDWRDSAMLVLRTKPKFWENLTSPLFGTLS
PPSETSEPSILETCALIMKIICLEIYYVVKGSLDQSLKDTLKKFSIEKRFAYWSGYVK
SLAVHVAETEGSSCTSLLEYQMLVSAWRMLLIIATTHADIMHLTDSVVRRQLFLDVLD
GTKALLLVPASVNCLRLGSMKCTLLLILLRQWKRELGSVDEILGPLTEILEGVLQADQ
QLMEKTKAKVFSAFITVLQMKEMKVSDIPQYSQLVLNVCETLQEEVIALFDQTRHSLA
LGSATEDKDSMETDDCSRSRHRDQRDGVCVLGLHLAKELCEVDEDGDSWLQVTRRLPI
LPTLLTTLEVSLRMKQNLHFTEATLHLLLTLARTQQGATAVAGAGITQSICLPLLSVY
QLSTNGTAQTPSASRKSLDAPSWPGVYRLSMSLMEQLLKTLRYNFLPEALDFVGVHQE
RTLQCLNAVRTVQSLACLEEADHTVGFILQLSNFMKEWHFHLPQLMRDIQVNLGYLCQ
ACTSLLHSRKMLQHYLQNKNGDGLPSAVAQRVQRPPSAASAAPSSSKQPAADTEASEQ
QALHTVQYGLLKILSKTLAALRHFTPDVCQILLDQSLDLAEYNFLFALSFTTPTFDSE
VAPSFGTLLATVNVALNMLGELDKKKEPLTQAVGLSTQAEGTRTLKSLLMFTMENCFY
LLISQAMRYLRDPAVHPRDKQRMKQELSSELSTLLSSLSRYFRRGAPSSPATGVLPSP
QGKSTSLSKASPESQEPLIQLVQAFVRHMQR"
BASE COUNT 999 a 1238 c 1083 g 1011 t
ORIGIN
1 cagggaagtc cacagccaaa aaggtgtata gcttcttgga taagatgtct ttctacaatg
61 aactttataa acacaagcct catgatgtga tctcccatga agatggaact ctttggcgga
121 gacaaacacc caaactcctt tatccccttg ggggtcaaac caaccttcgc atacctcaag
181 gcactgtggg ccaagtaatg ttggatgata gggcatacct ggtacgctgg gaatactcct
241 atagcagctg gaccctcttt acctgcgaga ttgaaatgtt gcttcatgtt gtttcaactg
301 cagatgtgat tcagcactgc cagcgagtca aacccatcat tgatctcgtc cataaggtca
361 tcagtacaga cctgtcgata gcagactgtc tcctgcccat cacatctcgc atctacatgc
421 tgctgcagcg gttaacgaca gtgatctccc cacctgtgga tgtcattgct tcttgtgtca
481 actgcttaac tgttttggct gcccgcaatc cagcaaaggt ctggactgat cttcgtcaca
541 caggtttttt accatttgtg gcccatcctg tctccagcct gagtcagatg attagtgcgg
601 aagggatgaa tgctggaggg tacggaaacc tcttgatgaa cagtgaacag cctcagggcg
661 agtatggggt tactattgcc tttctgcgct tgatcaccac ccttgtcaag gggcaacttg
721 gtagtaccca gagccaagga cttgtaccct gtgtaatgtt tgtgctgaag gagatgcttc
781 ccagctacca taagtggcgc tacaactctc atggagtgag ggaacagatt ggttgcctga
841 tcttggagct gattcatgcg atactgaacc tgtgccacga gacagacctg cacagcagtc
901 atactcccag cctgcagttt ctctgcatct gcagcctggc atacacagaa gcaggacaga
961 cagttatcaa tatcatgggc attggcgtgg acaccattga catggtgatg gctgctcagc
1021 ctcgaagtga tggggcagag ggccaggggc agggccagct gctgatcaag acagtgaaac
1081 tggcattctc cgtcaccaac aatgttattc ggctgaaacc tccttctaat gtggtgtccc
1141 ccctggaaca ggctctctca caacatggtg ctcatggaaa caacctcatt gctgttctag
1201 ccaaatacat ctaccacaaa catgaccctg ctttgccacg tcttgccatt cagctgctga
1261 aacgtctggc cacggtggcc ccaatgtcag tgtatgcttg tctgggcaat gatgcggctg
1321 ccattcgtga tgccttcctg acccgattgc agagcaaaat tgaggacatg cgcatcaaag
1381 tcatgattct agagttcctc actgttgcag tagagaccca gccaggcctc atcgaactgt
1441 ttctgaacct ggaagttaag gatggcagtg atggctcaaa ggaattcagc cttgggatgt
1501 ggagctgtct ccatgcagtg ctggagctga ttgattccca acagcaagat cgatactggt
1561 gcccacccct gctgcatcgt gccgccattg cctttttgca tgctctgtgg caggattgga
1621 gggacagtgc catgctggtc ctccgaacca aacccaagtt ttgggaaaat ttaaccagtc
1681 cgctgtttgg aaccctttct cctccctctg aaacatcaga gcccagcatc ctggaaacct
1741 gtgccctaat catgaagata atttgcttgg agatatacta tgtagtaaag ggttcattag
1801 accagtcatt aaaggataca ctgaagaaat tttccatcga gaaacgcttt gcctactggt
1861 cagggtatgt caagtcattg gcagttcacg tggccgaaac agaaggcagc agctgcacct
1921 ccttgttaga gtaccagatg ctggtgtccg cctggaggat gcttctcatc attgccacca
1981 ctcatgcaga tataatgcac ctgactgact ctgtggtgcg tcgccagctc tttcttgacg
2041 tgcttgatgg aaccaaagca ttactcctag ttccagcctc agtgaactgc cttcgccttg
2101 gctccatgaa gtgcactctg ctgcttatcc tcctccggca gtggaagaga gagttaggtt
2161 ctgtggatga aatccttgga cccttgacgg agatcctgga gggagtgctg caggccgacc
2221 agcaactcat ggagaagacc aaggccaagg tgttctcagc attcatcaca gtgttgcaaa
2281 tgaaggagat gaaagtaagt gacatccccc agtactccca gctggtgctg aatgtctgtg
2341 agaccctcca agaggaagtg attgcactct tcgaccagac ccgccacagt ctggcattag
2401 gcagtgccac agaggacaag gacagcatgg agactgacga ctgttctcgg tcccggcaca
2461 gggaccagcg tgatggggtg tgtgtcctgg gcctgcacct ggccaaggag ctgtgtgagg
2521 tagacgagga tggtgactcc tggctgcagg taacccgcag gctccccatc ctacccaccc
2581 tcctcaccac tctagaggtg agccttcgca tgaagcagaa cctgcatttc actgaggcca
2641 cattgcatct gctcctcacc ctggctcgca ctcagcaggg agccacagca gtggctggag
2701 ctggcatcac ccagagcatt tgtttgcccc ttctgagtgt gtaccagctg agcaccaacg
2761 gcacagcaca gacacctagt gcctctcgga agtccctgga tgccccctct tggccaggag
2821 tctaccgcct gtccatgtcc ctgatggagc agctgctcaa aactctgcgc tacaacttcc
2881 tgcctgaggc cctggacttc gtgggtgtcc accaggagcg gaccttacag tgcctcaacg
2941 cagtgaggac agtgcagagt ctggcctgcc tggaggaggc ggaccacacc gtgggtttta
3001 ttctgcagct ctctaacttc atgaaggagt ggcacttcca cctgcctcag ctcatgcgtg
3061 atatccaggt caacctgggt tacttgtgcc aggcatgtac ctctctcctg cacagtcgaa
3121 agatgctgca gcattactta cagaacaaaa atggggatgg cctcccctca gctgttgccc
3181 agcgagtcca gaggccaccg tctgctgctt ctgctgcccc ctcctcctcc aagcagcccg
3241 ctgctgacac agaggcatca gagcagcagg ccttgcacac agtccagtat ggccttctca
3301 agatcctcag caagacgctg gcagccctgc gccacttcac cccagatgtc tgccagattc
3361 tgctggatca gtccctggac cttgctgaat acaacttcct gtttgccctg agctttacca
3421 ctcccacctt tgactccgaa gtggccccct ccttcgggac ccttctggcc acagtgaatg
3481 tggccctcaa catgcttgga gagctggaca agaaaaagga gcccctcacc caggcagtgg
3541 ggctcagcac acaggcagaa gggaccagga cgttaaagtc cctcctgatg tttaccatgg
3601 aaaactgctt ctacctgctc atctctcagg cgatgcggta ccttagggac ccggctgtgc
3661 acccccggga caaacagcgg atgaagcagg agctcagctc tgagttgagc acgctgctgt
3721 ccagcctctc gcgctacttc cgccggggag cccccagctc ccctgccact ggtgtcctcc
3781 cctcgccgca gggcaagtcc acctctctct ccaaagccag ccctgagagt caggagcctc
3841 tgatccagtt ggtgcaggcg tttgtccggc atatgcaaag atagggcagt gctgttctgc
3901 ccacctaccc ctctccacca gcctacactg caccctggct ggcaggggtg ctgctggctg
3961 ctagggccta tacaatggag ggcacctcct gtcacccccc tcccggagta gccacgactc
4021 cagccaccac ccactgacgt tatttttata ctagatgaag aggtcaacag caggcatggg
4081 gagccgagtc ttctgtgctc aggtcctcac gctgcagacg ccccctagag gaactttcct
4141 tcctttccag cattccccac agcactgccg gccaggggag aggcggcagc ccagcagagg
4201 gctctatgca cgggtttcaa acctgttttc cacactctgt ctttgcagtt ttggtaattc
4261 tgtggtctat ttatacagat attaaaatct tgtttatagc caaaaaaaaa aaaaaaaaaa
4321 aaaaaaaaaa a
//