LOCUS BC040340 3016 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens transportin 1, mRNA (cDNA clone MGC:17116
IMAGE:4178989), complete cds.
ACCESSION BC040340
VERSION BC040340.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3016)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3016)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 12 Row: i Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23510378.
FEATURES Location/Qualifiers
source 1..3016
/db_xref="H-InvDB:HIT000052373"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17116 IMAGE:4178989"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3016
/gene="TNPO1"
/gene_synonym="IPO2"
/gene_synonym="MIP"
/gene_synonym="MIP1"
/gene_synonym="TRN"
/db_xref="GeneID:3842"
/db_xref="HGNC:HGNC:6401"
/db_xref="MIM:602901"
CDS 56..2728
/gene="TNPO1"
/gene_synonym="IPO2"
/gene_synonym="MIP"
/gene_synonym="MIP1"
/gene_synonym="TRN"
/codon_start=1
/product="transportin 1"
/protein_id="AAH40340.1"
/db_xref="GeneID:3842"
/db_xref="HGNC:HGNC:6401"
/db_xref="MIM:602901"
/translation="MEYEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYP
DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDS
SPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSA
EILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIE
NLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEA
CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQD
IRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRD
ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK
KALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLE
EEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLM
PPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAM
LNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPE
VRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMG
IEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWC
TSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKI
LHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV"
BASE COUNT 891 a 610 c 672 g 843 t
ORIGIN
1 gccgaaggcc cgagcgcccg aggcgtctgg gatggtgtgg gaccggcaaa ccaagatgga
61 gtatgagtgg aaacctgacg agcaagggct tcagcaaatc ctgcagctgt tgaaggagtc
121 ccagtcccca gacaccacca tccagagaac cgtgcaacaa aaactggaac aacttaatca
181 gtatccagac tttaacaact acttgatttt tgttcttaca aaattaaaat ctgaagatga
241 acccacaaga tcattgagtg gtcttatctt gaagaataat gtgaaagcac actttcagaa
301 cttcccaaat ggtgtaacag actttattaa aagtgaatgt ttaaataata ttggtgactc
361 ctctcctctg attagagcca ctgttggtat tttgatcaca actatagcct ccaagggaga
421 attgcagaat tggcctgacc tcttaccaaa actctgtagc ctgttggatt ctgaagatta
481 taatacctgt gagggagcat ttggtgccct tcagaagatt tgtgaagatt ctgctgagat
541 tttagacagt gatgttttag atcgtcctct caacatcatg attcccaaat ttttacagtt
601 cttcaagcat agtagtccaa aaataaggtc tcacgctgtt gcatgtgtca atcagtttat
661 catcagtagg actcaagctc taatgttgca cattgattct tttattgaga atctctttgc
721 attagctggt gatgaagaac cagaggtacg gaaaaatgtg tgccgagcac ttgtgatgtt
781 gctcgaagtt cgaatggatc gcctgcttcc tcacatgcat aatatagttg agtacatgct
841 acagaggact caagatcaag atgaaaatgt ggctttagaa gcctgtgaat tttggctaac
901 tttagctgaa cagccaatat gcaaagatgt actcgtaagg catcttccta agttgattcc
961 tgtgttagtg aatggcatga agtactcaga catagatatt atcctactta agggtgatgt
1021 tgaagaagac gaaacgattc ctgatagtga acaggatata cggccacgtt ttcaccgatc
1081 gaggacggtg gctcagcagc atgatgaaga tggaattgaa gaggaagatg atgatgatga
1141 tgaaattgat gatgatgata caatttctga ctggaatcta agaaaatgtt ctgctgctgc
1201 cctggatgtt cttgcaaatg tgtatcgtga tgaactgctg ccacatattt tgcccctttt
1261 gaaagaatta ctttttcatc atgaatgggt tgttaaagaa tcaggcattt tggttttagg
1321 agcaattgct gaaggttgca tgcagggcat gattccatac ttgcctgagc ttattcctca
1381 ccttattcag tgcctctctg ataaaaaggc tcttgtgcgt tccataacat gctggactct
1441 tagccgctat gcacactggg tggtcagcca gccgccagac acgtacctga agccattaat
1501 gacagaattg ctaaagcgca tcctggatag caacaagaga gtacaagaag ctgcctgcag
1561 tgcctttgct accctagaag aggaggcttg tacagaactt gttccttacc ttgcttatat
1621 acttgatacc ctggtctttg catttagtaa ataccagcat aagaacctgc tcattcttta
1681 cgatgccata ggaacattag cagattcagt aggacatcat ttaaacaaac cagaatatat
1741 tcagatgcta atgcctccac tgatccagaa atggaacatg ttaaaggatg aagataaaga
1801 tctcttccct ttacttgagt gcctatcttc agttgccaca gcactgcagt ctggattcct
1861 tccgtactgt gaacctgtgt atcagcgttg tgtaaaccta gtacagaaga ctcttgcaca
1921 agccatgcta aacaatgctc aaccagatca atatgaagct ccagataaag attttatgat
1981 agtggctctt gatttactga gtggcctggc tgaaggactt ggaggcaaca ttgaacagct
2041 ggtagcccga agtaacatcc tgacactaat gtatcagtgc atgcaggata aaatgccaga
2101 agttcgacag agttcttttg ccctgttagg tgacctcaca aaagcttgct ttcagcatgt
2161 taagccttgt atagctgatt tcatgccaat attgggaacc aacctaaatc cagaattcat
2221 ttcagtctgc aacaatgcca catgggcaat tggagaaatc tccattcaaa tgggtataga
2281 gatgcagcct tatattccta tggtgttgca ccagcttgta gaaatcatta acagacccaa
2341 cacaccaaag acgttgttag agaatacagc aataacaatt ggtcgtcttg gttacgtttg
2401 tcctcaagag gtggccccca tgctacagca gtttataaga ccctggtgca cctctctgag
2461 aaacataaga gacaatgagg aaaaggattc agcattccgt ggaatttgta ccatgatcag
2521 tgtgaatccc agtggcgtaa tccaagattt tatatttttt tgtgatgccg ttgcatcatg
2581 gattaaccca aaagatgatc tcagagacat gttctgtaag atccttcatg gatttaaaaa
2641 tcaagttggc gatgaaaatt ggaggcgttt ctctgaccag tttcctcttc ccttaaaaga
2701 gcgtcttgca gctttttatg gtgtttaatc taatacactt aagctgcagt cccaaaatta
2761 ggggtccttc agtcttggag actataaggg agcctctgca cccagggaaa atgttaccct
2821 ttacaggggg gaagggtaaa ccagtaggga atacagtaca atcccaaccc tactgggagg
2881 ggcgggaggg aggtgttgcc gtcactgtat taagtcgatg ttgggaaacg ttttaacatc
2941 tggagccttt gtgggtggaa atatgtctcc agttacaact ccgcagtgga tgtgaagaag
3001 caaaaaaaaa aaaaaa
//