LOCUS BC040339 4422 bp mRNA linear HUM 16-DEC-2006 DEFINITION Homo sapiens nucleotide-binding oligomerization domain containing 1, mRNA (cDNA clone MGC:17074 IMAGE:4338930), complete cds. ACCESSION BC040339 VERSION BC040339.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4422) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4422) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (27-NOV-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Lou Staudt cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 12 Row: o Column: 19 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 5174616. FEATURES Location/Qualifiers source 1..4422 /db_xref="H-InvDB:HIT000052372" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:17074 IMAGE:4338930" /tissue_type="Lymph, lymphoma" /clone_lib="NIH_MGC_85" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..4422 /gene="NOD1" /gene_synonym="CLR7.1" /gene_synonym="NLRC1" /db_xref="GeneID:10392" /db_xref="HGNC:HGNC:16390" /db_xref="MIM:605980" CDS 439..3300 /gene="NOD1" /gene_synonym="CLR7.1" /gene_synonym="NLRC1" /codon_start=1 /product="NOD1 protein" /protein_id="AAH40339.1" /db_xref="GeneID:10392" /db_xref="HGNC:HGNC:16390" /db_xref="MIM:605980" /translation="MEEQGHSEMEIIPSESHPHIQLLKSNRELLVTHIRNTQCLVDNL LKNDYFSAEDAEIVCACPTQPDKVRKILDLVQSKGEEVSEFFLYLLQQLADAYVDLRP WLLEIGFSPSLLTQSKVVVNTDPVSRYTQQLRHHLGRDSKFVLCYAQKEELLLEEIYM DTIMELVGFSNESLGSLNSLACLLDHTTGILNEQGETIFILGDAGVGKSMLLQRLQSL WATGRLDAGVKFFFHFRCRMFSCFKESDRLCLQDLLFKHYCYPERDPEEVFAFLLRFP HVALFTFDGLDELHSDLDLSRVPDSSCPWEPAHPLVLLANLLSGKLLKGASKLLTART GIEVPRQFLRKKVLLRGFSPSHLRAYARRMFPERALQDRLLSQLEANPNLCSLCSVPL FCWIIFRCFQHFRAAFEGSPQLPDCTMTLTDVFLLVTEVHLNRMQPSSLVQRNTHSPV ETLHAGRDTLCSLGQVAHRGMEKSLFVFTQEEVQASGLQERDMQLGFLRALPELGPGG DQQSYEFFHLTLQAFFTAFFLVLDDRVGTQELLRFFQEWMPPAGAATTSCYPPFLPFQ CLQGSGPAREDLFKNKDHFQFTNLFLCGLLSKAKQKLLRHLVPAAALRRKRKALWAHL FSSLRGYLKSLPRVQVESFNQVQAMPTFIWMLRCIYETQSQKVGQLAARGICANYLKL TYCNACSADCSALSFVLHHFPKRLALDLDNNNLNDYGVRELQPCFSRLTVLRLSVNQI TDGGVKVLSEELTKYKIVTYLGLYNNQITDVGARYVTKILDECKGLTHLKLGKNKITS EGGKYLALAVKNSKSISEVGMWGNQVGDEGAKAFAEALRNHPSLTTLSLASNGISTEG GKSLARALQQNTSLEILWLTQNELNDEVAESLAEMLKVNQTLKHLWLIQNQITAKGTA QLADALQSNTGITEICLNGNLIKPEEAKVYEDEKRIICF" BASE COUNT 1026 a 1224 c 1203 g 969 t ORIGIN 1 cccggccccg gcgtccccgg accatggcgc tctccgggct cttctctagc tctcagcggc 61 tgcgaagtct gtaaacctgg tggccaagtg attgtaagtc aggagacttt ccttcggttt 121 ctgcctttga tggcaagagg tggagattgt ggcggcgatt acagaaaacg tctgggaaga 181 caagttgctg tttttatggg aatcgcaggc ttggaagaga cagaagcaat tccagaaata 241 aattggaaat tgaagattta aacaatgttg ttttaaaaca ttctaacttc aaagaatgat 301 gccagaaact taaaaagggg ctgcgcagag tagcaggggc cctggagggc gcggcctgaa 361 tcctgattgc ccttctgctg agaggacaca cgcagctgaa gatgaatttg ggaaaagtag 421 ccgcttgcta ctttaactat ggaagagcag ggccacagtg agatggaaat aatcccatca 481 gagtctcacc cccacattca attactgaaa agcaatcggg aacttctggt cactcacatc 541 cgcaatactc agtgtctggt ggacaacttg ctgaagaatg actacttctc ggccgaagat 601 gcggagattg tgtgtgcctg ccccacccag cctgacaagg tccgcaaaat tctggacctg 661 gtacagagca agggcgagga ggtgtccgag ttcttcctct acttgctcca gcaactcgca 721 gatgcctacg tggacctcag gccttggctg ctggagatcg gcttctcccc ttccctgctc 781 actcagagca aagtcgtggt caacactgac ccagtgagca ggtataccca gcagctgcga 841 caccatctgg gccgtgactc caagttcgtg ctgtgctatg cccagaagga ggagctgctg 901 ctggaggaga tctacatgga caccatcatg gagctggttg gcttcagcaa tgagagcctg 961 ggcagcctga acagcctggc ctgcctcctg gaccacacca ccggcatcct caatgagcag 1021 ggtgagacca tcttcatcct gggtgatgct ggggtgggca agtccatgct gctacagcgg 1081 ctgcagagcc tctgggccac gggccggcta gacgcagggg tcaaattctt cttccacttt 1141 cgctgccgca tgttcagctg cttcaaggaa agtgacaggc tgtgtctgca ggacctgctc 1201 ttcaagcact actgctaccc agagcgggac cccgaggagg tgtttgcctt cctgctgcgc 1261 ttcccccacg tggccctctt caccttcgat ggcctggacg agctgcactc ggacttggac 1321 ctgagccgtg tgcctgacag ctcctgcccc tgggagcctg cccaccccct ggtcttgctg 1381 gccaacctgc tcagtgggaa gctgctcaag ggggctagca agctgctcac agcccgcaca 1441 ggcatcgagg tcccgcgcca gttcctgcgg aagaaggtgc ttctccgggg cttctccccc 1501 agccacctgc gcgcctatgc caggaggatg ttccccgagc gggccctgca ggaccgcctg 1561 ctgagccagc tggaggccaa ccccaacctc tgcagcctgt gctctgtgcc cctcttctgc 1621 tggatcatct tccggtgctt ccagcacttc cgtgctgcct ttgaaggctc accacagctg 1681 cccgactgca cgatgaccct gacagatgtc ttcctcctgg tcactgaggt ccatctgaac 1741 aggatgcagc ccagcagcct ggtgcagcgg aacacacaca gcccagtgga gaccctccac 1801 gccggccggg acactctgtg ctcgctgggg caggtggccc accggggcat ggagaagagc 1861 ctctttgtct tcacccagga ggaggtgcag gcctccgggc tgcaggagag agacatgcag 1921 ctgggcttcc tgcgggcttt gccggagctg ggccccgggg gtgaccagca gtcctatgag 1981 tttttccacc tcaccctcca ggccttcttt acagccttct tcctcgtgct ggacgacagg 2041 gtgggcactc aggagctgct caggttcttc caggagtgga tgccccctgc gggggcagcg 2101 accacgtcct gctatcctcc cttcctcccg ttccagtgcc tgcagggcag tggtccggcg 2161 cgggaagacc tcttcaagaa caaggatcac ttccagttca ccaacctctt cctgtgcggg 2221 ctgttgtcca aagccaaaca gaaactcctg cggcatctgg tgcccgcggc agccctgagg 2281 agaaagcgca aggccctgtg ggcacacctg ttttccagcc tgcggggcta cctgaagagc 2341 ctgccccgcg ttcaggtcga aagcttcaac caggtgcagg ccatgcccac gttcatctgg 2401 atgctgcgct gcatctacga gacacagagc cagaaggtgg ggcagctggc ggccaggggc 2461 atctgcgcca actacctcaa gctgacctac tgcaacgcct gctcggccga ctgcagcgcc 2521 ctctccttcg tcctgcatca cttccccaag cggctggccc tagacctaga caacaacaat 2581 ctcaacgact acggcgtgcg ggagctgcag ccctgcttca gccgcctcac tgttctcaga 2641 ctcagcgtaa accagatcac tgacggtggg gtaaaggtgc taagcgaaga gctgaccaaa 2701 tacaaaattg tgacctattt gggtttatac aacaaccaga tcaccgatgt cggagccagg 2761 tacgtcacca aaatcctgga tgaatgcaaa ggcctcacgc atcttaaact gggaaaaaac 2821 aaaataacaa gtgaaggagg gaagtatctc gccctggctg tgaagaacag caaatcaatc 2881 tctgaggttg ggatgtgggg caatcaagtt ggggatgaag gagcaaaagc cttcgcagag 2941 gctctgcgga accaccccag cttgaccacc ctgagtcttg cgtccaacgg catctccaca 3001 gaaggaggaa agagccttgc gagggccctg cagcagaaca cgtctctaga aatactgtgg 3061 ctgacccaaa atgaactcaa cgatgaagtg gcagagagtt tggcagaaat gttgaaagtc 3121 aaccagacgt taaagcattt atggcttatc cagaatcaga tcacagctaa ggggactgcc 3181 cagctggcag atgcgttaca gagcaacact ggcataacag agatttgcct aaatggaaac 3241 ctgataaaac cagaggaggc caaagtctat gaagatgaga agcggattat ctgtttctga 3301 gaggatgctt tcctgttcat ggggtttttg ccctggagcc tcagcagcaa atgccactct 3361 gggcagtctt ttgtgtcagt gtcttaaagg ggcctgcgca ggcgggacta tcaggagtcc 3421 actgcctcca tgatgcaagc cagcttcctg tgcagaaggt ctggtcggca aactccctaa 3481 gtacccgcta caattctgca gaaaaagaat gtgtcttgcg agctgttgta gttacagtaa 3541 atacactgtg aagagacttt attgcctatt ataattattt ttatctgaag ctagaggaat 3601 aaagctgtga gcaaacagag gaggccagcc tcacctcatt ccaacacctg ccatagggac 3661 caacgggagc gagttggtca ccgctctttt cattgaagag ttgaggatgt ggcacaaagt 3721 tggtgccaag cttcttgaat aaaacgtgtt tgatggatta gtattatacc tgaaatattt 3781 tcttccttct cagcactttc ccatgtattg atactggtcc cacttcacag ctggagacac 3841 cggagtatgt gcagtgtggg atttgactcc tccaaggttt tgtggaaagt taatgtcaag 3901 gaaaggatgc accacgggct tttaatttta atcctggagt ctcactgtct gctggcaaag 3961 atagagaatg ccctcagctc ttagctggtc taagaatgac gatgccttca aaatgctgct 4021 tccactcagg gcttctcctc tgctaggcta ccctcctcta gaaggctgag taccatgggc 4081 tacagtgtct ggccttggga agaagtgatt ctgtccctcc aaagaaatag ggcatggctt 4141 gcccctgtgg ccctggcatc caaatggctg cttttgtctc ccttacctcg tgaagagggg 4201 aagtctcttc ctgcctccca agcagctgaa gggtgactaa acgggcgcca agactcaggg 4261 gatcggctgg gaactgggcc agcagagcat gttggacacc ccccaccatg gtgggcttgt 4321 ggtggctgct ccatgagggt gggggtgata ctactagatc acttgtcctc ttgccagctc 4381 atttgttaat aaaatactga aaacactaaa aaaaaaaaaa aa //