LOCUS       BC040339                4422 bp    mRNA    linear   HUM 16-DEC-2006
DEFINITION  Homo sapiens nucleotide-binding oligomerization domain containing
            1, mRNA (cDNA clone MGC:17074 IMAGE:4338930), complete cds.
ACCESSION   BC040339
VERSION     BC040339.1
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 4422)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 4422)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2002) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Lou Staudt
            cDNA Library Preparation: Life Technologies, Inc.
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Baylor College of Medicine Human Genome
            Sequencing Center
            Center code: BCM-HGSC
            Web site: http://www.hgsc.bcm.tmc.edu/cdna/
            Contact: amg@bcm.tmc.edu
            Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
            Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
            A.N., Gibbs, R.A.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 12 Row: o Column: 19
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 5174616.
FEATURES             Location/Qualifiers
     source          1..4422
                     /db_xref="H-InvDB:HIT000052372"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:17074 IMAGE:4338930"
                     /tissue_type="Lymph, lymphoma"
                     /clone_lib="NIH_MGC_85"
                     /lab_host="DH10B"
                     /note="Vector: pCMV-SPORT6"
     gene            1..4422
                     /gene="NOD1"
                     /gene_synonym="CLR7.1"
                     /gene_synonym="NLRC1"
                     /db_xref="GeneID:10392"
                     /db_xref="HGNC:HGNC:16390"
                     /db_xref="MIM:605980"
     CDS             439..3300
                     /gene="NOD1"
                     /gene_synonym="CLR7.1"
                     /gene_synonym="NLRC1"
                     /codon_start=1
                     /product="NOD1 protein"
                     /protein_id="AAH40339.1"
                     /db_xref="GeneID:10392"
                     /db_xref="HGNC:HGNC:16390"
                     /db_xref="MIM:605980"
                     /translation="MEEQGHSEMEIIPSESHPHIQLLKSNRELLVTHIRNTQCLVDNL
                     LKNDYFSAEDAEIVCACPTQPDKVRKILDLVQSKGEEVSEFFLYLLQQLADAYVDLRP
                     WLLEIGFSPSLLTQSKVVVNTDPVSRYTQQLRHHLGRDSKFVLCYAQKEELLLEEIYM
                     DTIMELVGFSNESLGSLNSLACLLDHTTGILNEQGETIFILGDAGVGKSMLLQRLQSL
                     WATGRLDAGVKFFFHFRCRMFSCFKESDRLCLQDLLFKHYCYPERDPEEVFAFLLRFP
                     HVALFTFDGLDELHSDLDLSRVPDSSCPWEPAHPLVLLANLLSGKLLKGASKLLTART
                     GIEVPRQFLRKKVLLRGFSPSHLRAYARRMFPERALQDRLLSQLEANPNLCSLCSVPL
                     FCWIIFRCFQHFRAAFEGSPQLPDCTMTLTDVFLLVTEVHLNRMQPSSLVQRNTHSPV
                     ETLHAGRDTLCSLGQVAHRGMEKSLFVFTQEEVQASGLQERDMQLGFLRALPELGPGG
                     DQQSYEFFHLTLQAFFTAFFLVLDDRVGTQELLRFFQEWMPPAGAATTSCYPPFLPFQ
                     CLQGSGPAREDLFKNKDHFQFTNLFLCGLLSKAKQKLLRHLVPAAALRRKRKALWAHL
                     FSSLRGYLKSLPRVQVESFNQVQAMPTFIWMLRCIYETQSQKVGQLAARGICANYLKL
                     TYCNACSADCSALSFVLHHFPKRLALDLDNNNLNDYGVRELQPCFSRLTVLRLSVNQI
                     TDGGVKVLSEELTKYKIVTYLGLYNNQITDVGARYVTKILDECKGLTHLKLGKNKITS
                     EGGKYLALAVKNSKSISEVGMWGNQVGDEGAKAFAEALRNHPSLTTLSLASNGISTEG
                     GKSLARALQQNTSLEILWLTQNELNDEVAESLAEMLKVNQTLKHLWLIQNQITAKGTA
                     QLADALQSNTGITEICLNGNLIKPEEAKVYEDEKRIICF"
BASE COUNT         1026 a         1224 c         1203 g          969 t
ORIGIN      
        1 cccggccccg gcgtccccgg accatggcgc tctccgggct cttctctagc tctcagcggc
       61 tgcgaagtct gtaaacctgg tggccaagtg attgtaagtc aggagacttt ccttcggttt
      121 ctgcctttga tggcaagagg tggagattgt ggcggcgatt acagaaaacg tctgggaaga
      181 caagttgctg tttttatggg aatcgcaggc ttggaagaga cagaagcaat tccagaaata
      241 aattggaaat tgaagattta aacaatgttg ttttaaaaca ttctaacttc aaagaatgat
      301 gccagaaact taaaaagggg ctgcgcagag tagcaggggc cctggagggc gcggcctgaa
      361 tcctgattgc ccttctgctg agaggacaca cgcagctgaa gatgaatttg ggaaaagtag
      421 ccgcttgcta ctttaactat ggaagagcag ggccacagtg agatggaaat aatcccatca
      481 gagtctcacc cccacattca attactgaaa agcaatcggg aacttctggt cactcacatc
      541 cgcaatactc agtgtctggt ggacaacttg ctgaagaatg actacttctc ggccgaagat
      601 gcggagattg tgtgtgcctg ccccacccag cctgacaagg tccgcaaaat tctggacctg
      661 gtacagagca agggcgagga ggtgtccgag ttcttcctct acttgctcca gcaactcgca
      721 gatgcctacg tggacctcag gccttggctg ctggagatcg gcttctcccc ttccctgctc
      781 actcagagca aagtcgtggt caacactgac ccagtgagca ggtataccca gcagctgcga
      841 caccatctgg gccgtgactc caagttcgtg ctgtgctatg cccagaagga ggagctgctg
      901 ctggaggaga tctacatgga caccatcatg gagctggttg gcttcagcaa tgagagcctg
      961 ggcagcctga acagcctggc ctgcctcctg gaccacacca ccggcatcct caatgagcag
     1021 ggtgagacca tcttcatcct gggtgatgct ggggtgggca agtccatgct gctacagcgg
     1081 ctgcagagcc tctgggccac gggccggcta gacgcagggg tcaaattctt cttccacttt
     1141 cgctgccgca tgttcagctg cttcaaggaa agtgacaggc tgtgtctgca ggacctgctc
     1201 ttcaagcact actgctaccc agagcgggac cccgaggagg tgtttgcctt cctgctgcgc
     1261 ttcccccacg tggccctctt caccttcgat ggcctggacg agctgcactc ggacttggac
     1321 ctgagccgtg tgcctgacag ctcctgcccc tgggagcctg cccaccccct ggtcttgctg
     1381 gccaacctgc tcagtgggaa gctgctcaag ggggctagca agctgctcac agcccgcaca
     1441 ggcatcgagg tcccgcgcca gttcctgcgg aagaaggtgc ttctccgggg cttctccccc
     1501 agccacctgc gcgcctatgc caggaggatg ttccccgagc gggccctgca ggaccgcctg
     1561 ctgagccagc tggaggccaa ccccaacctc tgcagcctgt gctctgtgcc cctcttctgc
     1621 tggatcatct tccggtgctt ccagcacttc cgtgctgcct ttgaaggctc accacagctg
     1681 cccgactgca cgatgaccct gacagatgtc ttcctcctgg tcactgaggt ccatctgaac
     1741 aggatgcagc ccagcagcct ggtgcagcgg aacacacaca gcccagtgga gaccctccac
     1801 gccggccggg acactctgtg ctcgctgggg caggtggccc accggggcat ggagaagagc
     1861 ctctttgtct tcacccagga ggaggtgcag gcctccgggc tgcaggagag agacatgcag
     1921 ctgggcttcc tgcgggcttt gccggagctg ggccccgggg gtgaccagca gtcctatgag
     1981 tttttccacc tcaccctcca ggccttcttt acagccttct tcctcgtgct ggacgacagg
     2041 gtgggcactc aggagctgct caggttcttc caggagtgga tgccccctgc gggggcagcg
     2101 accacgtcct gctatcctcc cttcctcccg ttccagtgcc tgcagggcag tggtccggcg
     2161 cgggaagacc tcttcaagaa caaggatcac ttccagttca ccaacctctt cctgtgcggg
     2221 ctgttgtcca aagccaaaca gaaactcctg cggcatctgg tgcccgcggc agccctgagg
     2281 agaaagcgca aggccctgtg ggcacacctg ttttccagcc tgcggggcta cctgaagagc
     2341 ctgccccgcg ttcaggtcga aagcttcaac caggtgcagg ccatgcccac gttcatctgg
     2401 atgctgcgct gcatctacga gacacagagc cagaaggtgg ggcagctggc ggccaggggc
     2461 atctgcgcca actacctcaa gctgacctac tgcaacgcct gctcggccga ctgcagcgcc
     2521 ctctccttcg tcctgcatca cttccccaag cggctggccc tagacctaga caacaacaat
     2581 ctcaacgact acggcgtgcg ggagctgcag ccctgcttca gccgcctcac tgttctcaga
     2641 ctcagcgtaa accagatcac tgacggtggg gtaaaggtgc taagcgaaga gctgaccaaa
     2701 tacaaaattg tgacctattt gggtttatac aacaaccaga tcaccgatgt cggagccagg
     2761 tacgtcacca aaatcctgga tgaatgcaaa ggcctcacgc atcttaaact gggaaaaaac
     2821 aaaataacaa gtgaaggagg gaagtatctc gccctggctg tgaagaacag caaatcaatc
     2881 tctgaggttg ggatgtgggg caatcaagtt ggggatgaag gagcaaaagc cttcgcagag
     2941 gctctgcgga accaccccag cttgaccacc ctgagtcttg cgtccaacgg catctccaca
     3001 gaaggaggaa agagccttgc gagggccctg cagcagaaca cgtctctaga aatactgtgg
     3061 ctgacccaaa atgaactcaa cgatgaagtg gcagagagtt tggcagaaat gttgaaagtc
     3121 aaccagacgt taaagcattt atggcttatc cagaatcaga tcacagctaa ggggactgcc
     3181 cagctggcag atgcgttaca gagcaacact ggcataacag agatttgcct aaatggaaac
     3241 ctgataaaac cagaggaggc caaagtctat gaagatgaga agcggattat ctgtttctga
     3301 gaggatgctt tcctgttcat ggggtttttg ccctggagcc tcagcagcaa atgccactct
     3361 gggcagtctt ttgtgtcagt gtcttaaagg ggcctgcgca ggcgggacta tcaggagtcc
     3421 actgcctcca tgatgcaagc cagcttcctg tgcagaaggt ctggtcggca aactccctaa
     3481 gtacccgcta caattctgca gaaaaagaat gtgtcttgcg agctgttgta gttacagtaa
     3541 atacactgtg aagagacttt attgcctatt ataattattt ttatctgaag ctagaggaat
     3601 aaagctgtga gcaaacagag gaggccagcc tcacctcatt ccaacacctg ccatagggac
     3661 caacgggagc gagttggtca ccgctctttt cattgaagag ttgaggatgt ggcacaaagt
     3721 tggtgccaag cttcttgaat aaaacgtgtt tgatggatta gtattatacc tgaaatattt
     3781 tcttccttct cagcactttc ccatgtattg atactggtcc cacttcacag ctggagacac
     3841 cggagtatgt gcagtgtggg atttgactcc tccaaggttt tgtggaaagt taatgtcaag
     3901 gaaaggatgc accacgggct tttaatttta atcctggagt ctcactgtct gctggcaaag
     3961 atagagaatg ccctcagctc ttagctggtc taagaatgac gatgccttca aaatgctgct
     4021 tccactcagg gcttctcctc tgctaggcta ccctcctcta gaaggctgag taccatgggc
     4081 tacagtgtct ggccttggga agaagtgatt ctgtccctcc aaagaaatag ggcatggctt
     4141 gcccctgtgg ccctggcatc caaatggctg cttttgtctc ccttacctcg tgaagagggg
     4201 aagtctcttc ctgcctccca agcagctgaa gggtgactaa acgggcgcca agactcaggg
     4261 gatcggctgg gaactgggcc agcagagcat gttggacacc ccccaccatg gtgggcttgt
     4321 ggtggctgct ccatgagggt gggggtgata ctactagatc acttgtcctc ttgccagctc
     4381 atttgttaat aaaatactga aaacactaaa aaaaaaaaaa aa
//