LOCUS BC040280 2035 bp mRNA linear HUM 06-JUN-2006
DEFINITION Homo sapiens coiled-coil domain containing 83, mRNA (cDNA clone
MGC:34732 IMAGE:5166625), complete cds.
ACCESSION BC040280
VERSION BC040280.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2035)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2035)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 52 Row: n Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40255179.
FEATURES Location/Qualifiers
source 1..2035
/db_xref="H-InvDB:HIT000052362"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34732 IMAGE:5166625"
/tissue_type="Brain, adult medulla"
/clone_lib="NIH_MGC_119"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2035
/gene="CCDC83"
/gene_synonym="FLJ42119"
/gene_synonym="HSD9"
/gene_synonym="MGC34732"
/db_xref="GeneID:220047"
/db_xref="HGNC:HGNC:28535"
CDS 191..1432
/gene="CCDC83"
/gene_synonym="FLJ42119"
/gene_synonym="HSD9"
/gene_synonym="MGC34732"
/codon_start=1
/product="CCDC83 protein"
/protein_id="AAH40280.1"
/db_xref="GeneID:220047"
/db_xref="HGNC:HGNC:28535"
/translation="MENSGKANKKDTHDGPPKEIKLPTSEALLDYQCQIKEDAVEQFM
FQIKTLRKKNQKYHERNSRLKEEQIWHIRHLLKELSEEKAEGLPVVTREDVEEAMKEK
WKFERDQEKNLRDMRMQISNAEKLFLEKLSEKEYWEEYKNVGSERHAKLITSLQNDIN
TVKENAEKMSEHYKITLEDTRKKIIKETLLQLDQKKEWATQNAVKLIDKGSYLEIWEN
DWLKKEVATHRKEVEELKNAIHELEAENLVLIDQLSNCRLVDLKIPRRLYLTQAAGLE
VPPEEMSLELPETHIEEKSELQPTEVESRDLMSSSDESTILHLSHENSIEDLQYVKID
KEENSGTEFGDTDMKYLLYEDEKDFKDYVNLGPLGVKLMSVESKKMPIHFQEKEIPVK
LYKDVRSPESHITYKMMKSFL"
BASE COUNT 792 a 344 c 413 g 486 t
ORIGIN
1 gaagggctct gataggccca ctcctcttct ccacccagga gatgagaagg agggcaggcc
61 tttttaatct gatcagaatg ttaacccatc tctccgcctt gcggtagaac ccctggatac
121 attatttgcc ctctcgaaag gcaggctctg aatttgattc aggtatattt cttcatagct
181 aaccagcaca atggaaaact cagggaaagc aaataaaaag gatacacatg acgggccacc
241 aaaagaaatt aaactgccta ccagtgaagc acttctagac tatcaatgtc aaataaagga
301 agatgccgtg gagcaattca tgtttcaaat aaagacactt aggaaaaaga accaaaaata
361 tcatgaaaga aatagccgct taaaagaaga acagatttgg cacatacggc atctactaaa
421 ggaactgagt gaagagaagg cagagggatt gccagttgta acaagagagg atgttgaaga
481 agcgatgaag gaaaaatgga agtttgaaag agaccaggaa aaaaacttga gagatatgcg
541 catgcaaata agtaatgctg agaaactatt tcttgagaaa ctcagtgaaa aggaatattg
601 ggaggagtac aagaatgtag ggagtgaacg acatgctaaa ctcattacct ccttacaaaa
661 tgacatcaac acagttaaag agaatgcaga gaaaatgtca gaacactata aaatcactct
721 ggaagatact agaaagaaaa taatcaagga aactttgttg caactggacc aaaagaagga
781 atgggccaca cagaatgctg taaagctcat tgacaagggc agttatctag agatctggga
841 gaatgactgg ctcaaaaaag aggttgcaac tcacaggaag gaagttgaag aattaaaaaa
901 tgctattcat gaactggaag cagaaaattt ggtgcttatt gatcaactat ccaactgtag
961 acttgtggat ctcaagatac ccaggcgact atatcttacc caagctgctg gactagaagt
1021 gccacctgaa gaaatgtctt tggaattgcc agaaacacat atagaagaga agtcagaatt
1081 gcaacccaca gaagtagaaa gtagagactt gatgtcctca tcagatgaga gcactatctt
1141 acatcttagt catgaaaata gcatcgaaga tctccagtat gtgaagatag ataaagagga
1201 aaactcaggc acagagtttg gggacactga tatgaagtac ttactatatg aggatgagaa
1261 ggatttcaag gattatgtaa acttgggccc cctgggagtg aagcttatga gtgtggagag
1321 caagaaaatg cccattcatt ttcaagagaa ggaaattcca gtcaaactct ataaagatgt
1381 caggagccca gaaagccaca tcacatataa gatgatgaag tcttttctct aagacggaaa
1441 gctgcaaagg aaacacaact tttccttata aatgttcttt gggaactgaa gtatatccgt
1501 tgcccatttt acttacactt tggctcattt ttaaaccagc tgttatttct aaaggtcata
1561 tttacattta aaatcaaagg tattcagcta ttcatttact tgcatggtat gagtgaccaa
1621 aacggaagca cgctttgtat ttctacactg aagtattcag aagcatgaca gtgggttcaa
1681 ggtagtctct gaggttcctt ttcacacaca aaaaattcac tgattaatct gtgattccag
1741 tatgaaatag ttccattaga aatgttttta agaaaaactt agaagtttgc atagcattgt
1801 ctacacatct ttccctctga ggatgctcaa tgtgatagac agccagtcta taatgcaagc
1861 caattctccg tagtttaacc ctgtgtatta gtctgttctc atgctgctaa taaagacata
1921 attgaaactg ggtaatttat aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1981 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//