LOCUS BC040277 4079 bp mRNA linear HUM 01-SEP-2006
DEFINITION Homo sapiens cyclic nucleotide gated channel alpha 4, mRNA (cDNA
clone IMAGE:5167238), partial cds.
ACCESSION BC040277
VERSION BC040277.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4079)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4079)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 52 Row: o Column: 19.
FEATURES Location/Qualifiers
source 1..4079
/db_xref="H-InvDB:HIT000096093"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5167238"
/tissue_type="Brain, adult medulla"
/clone_lib="NIH_MGC_119"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..4079
/gene="CNGA4"
/gene_synonym="CNG5"
/gene_synonym="OCNC2"
/gene_synonym="OCNCb"
/gene_synonym="OCNCBETA"
/db_xref="GeneID:1262"
/db_xref="HGNC:HGNC:2152"
/db_xref="MIM:609472"
CDS <1..1425
/gene="CNGA4"
/gene_synonym="CNG5"
/gene_synonym="OCNC2"
/gene_synonym="OCNCb"
/gene_synonym="OCNCBETA"
/codon_start=1
/product="CNGA4 protein"
/protein_id="AAH40277.1"
/db_xref="GeneID:1262"
/db_xref="HGNC:HGNC:2152"
/db_xref="MIM:609472"
/translation="VIGEGLWEGGGRQGGGGAREGKVEPEGRRRDLRRGDFYRKLLPV
LDPSGDYYYWWLNTMVFPVMYNLIILVCRACFPDLQHGYLVAWLVLDYTSDLLYLLDM
VVRFHTGFLEQGILVVDKGRISSRYVRTWSFFLDLASLMPTDVVYVRLGPHTPTLRLN
RFLRAPRLFEAFDRTETRTAYPNAFRIAKLMLYIFVVIHWNSCLYFALSRYLGFGRDA
WVYPDPAQPGFERLRRQYLYSFYFSTLILTTVGDTPPPAREEEYLFMVGDFLLAVMGF
ATIMGSMSSVIYNMNTADAAFYPDHALVKKYMKLQHVNRKLERRVIDWYQHLQINKKM
TNEVAILQHLPERLRAEVAVSVHLSTLSRVQIFQNCEASLLEELVLKLQPQTYSPGEY
VCRKGDIGQEMYIIREGQLAVVADDGITQYAVLGAGLYFGEISIINIKGGYPSICSRD
KDGWGRGEQQSPVLGPDSTSGLNF"
BASE COUNT 1077 a 1059 c 991 g 952 t
ORIGIN
1 gtcataggcg aaggcctctg ggaaggtgga ggccggcagg gcggaggcgg agcccgggaa
61 ggaaaggtgg aaccagaggg cagaaggcgg gacctaagga gaggcgattt ttacaggaag
121 ttgctgcctg tcctggaccc atctggggat tactactact ggtggctgaa cacaatggtc
181 ttcccagtca tgtataacct catcatcctc gtgtgcagag cctgcttccc cgacttgcag
241 cacggttatc tggtggcctg gttggtgctg gactacacga gtgacctgct atacctacta
301 gacatggtgg tgcgcttcca cacaggattc ttggaacagg gcatcctggt ggtggacaag
361 ggtaggatct cgagtcgcta cgttcgcacc tggagtttct tcttggacct ggcttccctg
421 atgcccacag atgtggtcta cgtgcggctg ggcccgcaca cacccaccct gaggctgaac
481 cgctttctcc gcgcgccccg cctcttcgag gccttcgacc gcacagagac ccgcacagct
541 tacccaaatg cctttcgcat tgccaagctg atgctttaca tttttgtcgt catccattgg
601 aacagctgcc tatactttgc cctatcccgg tacctgggct tcgggcgtga cgcatgggtg
661 tacccggacc ccgcgcagcc tggctttgag cgcctgcggc gccagtacct ctatagcttt
721 tacttctcca cgctgatact gactacagtg ggcgatacac cgccgccagc cagggaagaa
781 gagtacctct tcatggtggg cgacttcctg ctggccgtca tgggtttcgc caccatcatg
841 ggtagcatga gctctgtcat ctacaacatg aacactgcag atgcggcttt ctacccagat
901 catgcactgg tgaagaagta catgaagctg cagcacgtca accgcaagct ggagcggcga
961 gttattgact ggtatcagca cctgcagatc aacaagaaga tgaccaacga ggtagccatc
1021 ttacagcact tgcctgagcg gctgcgggca gaagtggctg tgtctgtgca cctgtccact
1081 ctgagccggg tgcagatctt tcagaactgt gaggccagcc tgctggagga gctggtgctg
1141 aagctgcagc cccagaccta ctcaccaggt gaatatgtat gccgcaaagg agacattggc
1201 caagagatgt acatcatccg agagggtcaa ctggccgtgg tggcagatga tggtatcaca
1261 cagtatgctg tgctcggtgc agggctctac tttggggaga tcagcatcat caacatcaaa
1321 ggtgggtatc ccagtatttg ttccagggac aaggatgggt ggggtagggg ggaacagcag
1381 agcccagtgc tgggaccaga tagtacttca ggcctaaact tctgattgag gaaacctggc
1441 ccttctctga gtcactagat ggctcaggag aaaaacaaca catagaggat ccattccctg
1501 agaagaagct gagccaaggc cagtgaacag ggtgggttcg tggaagagag agtagacttg
1561 ctctgtggat attcacctga agcaccaata gactagtgga cagtgataga gataataata
1621 ataataatag ctaatattta ttacctgctt actgcatccc cttttctaag tgcttcacat
1681 gatattaact cattacattc ccgcagcagt tctataagat aagtactatt cttatcccaa
1741 ttttaaagat aaggaaatca aactcaaaga agttgggtaa tttgcccaac gtcgcacagg
1801 tatacacatg tgggatgagt ggaaaaaaca acctttttac agccaagtgg aaagagaaag
1861 gtagaagaga agaagttccc atttactgac catcacctct aggccaagcc aggtactacc
1921 tactggcttg ctttttcctc tcatcagccc tgtgcagtag gaattgttat gcctaatcac
1981 aggtattagg catgaggtcg tgcaagcagg aaatcctgca aatggggtaa gcacactgtc
2041 atggaccgag aagctggatg tgctctggct ctctcagcat gaggattcta ccctcaggga
2101 ttctgaaagc ctcacatctg tcctccaatg atcccctcaa gctccacatc ctgtatgtgg
2161 taggatgctg tctgtttgac tttggacaag tcatttccct atttaggcct cagtttaatc
2221 acctatccaa tgaggacaat aataaaaacc caatgagtta tttgtgagaa taaatgagct
2281 atgtgagtga ggcatccagc gcagtgcttg gcatacagca agtgttcaac aaatagtagc
2341 tccctttccc ttgtccaagg tccttctagc tctaagactt tgcagcattc agcctcacct
2401 atctccccac ccattctcca ccaacatctt tctaaactgc aaaggatatc atacagctcc
2461 ctgcttaaaa tacttcaata gtttcctact gccctcagca taaggcctga acttcatgtc
2521 atggcttatg agacccagtg tgacctagat ctcccctctc tccaccctcc ccacactctg
2581 cgcttctcgc actctgaact gcttactatt ttctgcatcc aactgactct tttctacccc
2641 cttccctctg ttcctgctcc ttcctctggc tagattgccc tatccccact tgtccccctc
2701 ctccccctag ttacctccta ctcagttcag gtgtatgaga ctgttcttgc atttctataa
2761 agaaatatct gagactggat aatttataaa gaaaagaggt ttaattggct cacagttctt
2821 caggatttac gggaagcatg gtgctggcat ttgctcagct tctagggagg cttcaagaag
2881 cttataattg tggcagaagg caaaggggga gcaggcatgt cacacggtga aagcaggagc
2941 aagggttggg ggaggtgcca cactttcaaa caaccaaaac aaccagctct cgactcacta
3001 actcaaagac agcatcaagc catgaaggat tcgcccccat aatccaatca cctcccacca
3061 ggtcccaccc ccaacattgg ggattacatt tcacatgaga tttgggcaga gacaaatatt
3121 caaattatat cttaggacat cccttcctcc agacttccct aaattccctg ccttacagtt
3181 tggtaggggc tctttgccta cctttccaca gcacctgatg aacatgtctt cactgcacca
3241 gccatactgt tatataacta ttccaatata tgtgtatctc ctctagactg tgaattattt
3301 gaggcaggtc actgatacct acccagcatg gagcctggtc cccagtatgt tactaaatga
3361 aagaattaat gaggcagaag gagaggctca gaagcacaaa tatggaggtg aaggtcctgg
3421 ttcaggagtg aaatgccacc tcctcaccct cctactaact gtcctcccat ctctgcccat
3481 gagccacagg gaacatgtct gggaaccgcc gcacagccaa catcaagagc ctaggttatt
3541 cagacctatt ctgcctgagc aaggaggacc tgcgggaggt gctgagcgag tatccacaag
3601 cacagaccat catggaggag aaaggacgtg agatcctgct gaaaatgaac aagttggacg
3661 tgaatgctga ggcagctgag atcgccctgc aggaggccac agagtcccgg ctacgaggcc
3721 tagaccagca gctggatgat ctacagacca agtttgctcg cctcctggct gagctggagt
3781 ccagcgcact taagattgct taccgcattg aacggctgga gtggcagact cgagagtggc
3841 caatgcccga ggacctggct gaggctgatg acgagggtga gcctgaggag ggaacttcca
3901 aagatgaaga gggcagggcc agccaggagg gacccccagg tccagagtga ccccatcccc
3961 atccccagga ttcccacctc ctagtgaatc cagagttgta gtaaagccta actgctgcaa
4021 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//