LOCUS BC040272 2853 bp mRNA linear HUM 03-JAN-2005
DEFINITION Homo sapiens interleukin 16 (lymphocyte chemoattractant factor),
mRNA (cDNA clone IMAGE:5181568), complete cds.
ACCESSION BC040272
VERSION BC040272.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2853)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2853)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (27-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 50 Row: c Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 27262656
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2853
/db_xref="H-InvDB:HIT000052359"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5181568"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2853
/gene="IL16"
/gene_synonym="HsT19289"
/gene_synonym="IL-16"
/gene_synonym="LCF"
/gene_synonym="prIL-16"
/db_xref="GeneID:3603"
/db_xref="MIM:603035"
CDS 247..1611
/gene="IL16"
/gene_synonym="HsT19289"
/gene_synonym="IL-16"
/gene_synonym="LCF"
/gene_synonym="prIL-16"
/codon_start=1
/product="IL16 protein"
/protein_id="AAH40272.1"
/db_xref="GeneID:3603"
/db_xref="MIM:603035"
/translation="MESHSRAGKSRKSAKFRSISRSLMLCNAKTSDDGSSPDEKYPDP
FEISLAQGKEGIFHSSVQLADTSEAGPSSVPDLALASEAAQLQAAGNDRGKTCRRIFF
MKESSTASSREKPGKLEAQSSNFLFPKACHQRARSNSTSVNPYCTREIDFPMTKKSAA
PTDRQPYSLCSNRKSLSQQLDCPAGKAAGTSRPTRSLSTAQLVQPSGGLQASVISNIV
LMKGQAKGLGFSIVGGKDSIYGPIGIYVKTIFAGGAAAADGRLQEGDEILELNGESMA
GLTHQDALQKFKQAKKGLLTLTVRTRLTAPPSLCSHLSPPLCRSLSSSTCITKDSSSF
ALESPSAPISTAKPNYRIMVEVSLQKEAGVGLGIGLCSVPYFQCISGIFVHTLSPGSV
AHLDGRLRCGDEIVEISDSPVHCLTLNEVYTILSHCDPGPVSIIVSRHPDPQKEEMEA
QEVK"
BASE COUNT 731 a 792 c 752 g 578 t
ORIGIN
1 caaatactcc cagccgagaa gctgccatcg atcctcccat ggacccctga tcctggtttg
61 gaggaacttt tcacagctct ctctccctcc ctcaaaccct gtgcaatgag tttgcagaag
121 agagtcttcc cgagaaggca gaacgggact catgaagtgg cagctaagcc ctgtccagtg
181 gccacccgtc agccaagggc cagagaccag gaaaggaaga aaggcagctt cacttcctct
241 ttgaggatgg agtcgcacag ccgcgctgga aagagcagaa aatctgcaaa atttcggtcc
301 atctccaggt ccctgatgct ctgtaatgct aagaccagtg atgatggctc tagccctgat
361 gagaaatatc ctgatccctt tgagatttcc ttggcccagg gcaaggaggg aattttccac
421 tcatctgtgc agctggcaga cacatcggag gctgggccca gcagtgttcc tgatctagca
481 ctggcctcgg aggctgctca actccaagca gctgggaatg atcgaggcaa gacctgtagg
541 aggatattct tcatgaagga atcttccaca gcttcctctc gagaaaagcc tggaaaacta
601 gaagcacaaa gtagtaactt cctgtttcct aaagcctgcc accaaagggc acgcagcaac
661 tcaaccagtg ttaatcccta ttgcacaaga gaaattgatt ttccaatgac caagaaatct
721 gcagcgccca cggacaggca gccttactct ctctgcagta acaggaagtc cctctctcaa
781 caattggact gtccagcagg aaaggctgcg ggaacttcga gaccaacacg gtccctgagc
841 acagctcagc tcgtgcagcc atctgggggc ctccaggctt cagtcatctc caacatcgtg
901 ctgatgaagg gccaggctaa gggtctgggc ttcagcatcg ttgggggaaa agacagcatt
961 tatggcccca ttgggattta cgtcaaaacc atttttgcag ggggagcagc agcagccgat
1021 ggaaggctac aggaaggtga tgaaattctg gagctcaatg gtgaatcaat ggctggacta
1081 acacatcagg atgctttgca gaagttcaag caagccaaaa aggggctcct caccctcacc
1141 gtgagaaccc gcctgacggc gcctccttcc ctgtgcagcc acctgtctcc cccactgtgc
1201 cgctccctga gctccagcac ttgtatcacc aaggacagca gctccttcgc cttggaaagc
1261 ccctcggctc ccatcagcac cgccaagccc aattacagaa tcatggtgga ggtttctctg
1321 cagaaagagg ccggcgtggg cctgggcatc ggcctgtgca gcgttcccta cttccaatgc
1381 atctctggca ttttcgtcca cacgctgtca ccaggatccg tggcgcacct ggacggacgt
1441 ctccggtgtg gggacgagat tgtggaaatc agtgattccc ctgtgcactg cctgacgctc
1501 aatgaagtct acacgatcct gagtcactgt gatcccggtc cagtctccat cattgttagc
1561 cgacatccag acccacagaa ggaagaaatg gaggctcagg aggttaagta acttgtctag
1621 gtgttcacac ctagacagta gaggaaccgg gactagaaca caagcctttt tgactctagg
1681 actcatactc ttaactatta ctccaaagtg ataataaact gtctctgaac agcaactcaa
1741 agaagctgtg gcccaggctg tggaaaacac caagtttgga aaggagaggc atcaatggag
1801 tctggaagat gcagaaatgg agttgggtcc cccaggaagc tgactctgag atggagtttg
1861 gtctgcaggc agtgtcctgg ggttcactac ctgtggcagg gaggggagca ggcagggtag
1921 acagagggag gatggagctg aggtgcacac ccaacagctt cagccaagcc ctggagctct
1981 gcagccaaag tccccattag agttgtccta tgttggccaa catagctggg cctctgtaac
2041 cctatctcca gcagtccctg gagatgggct gccccattgg acaaggcagc tgtctgcagc
2101 tgtggcagcc cctggaggga cccacagctg aaagtagtct gccagcagca ctccccacag
2161 ctgggacacc aagcccttcc tcgatgggtg atctgggtgg catatctcca tatacatcag
2221 tcataggctc agaaagcttg aatgattttc ccaacccaaa gtcatacagc tcgccaggga
2281 ccaacaccaa gactgccata ctccagatcc acagtgactt cagataagaa gcagatggcc
2341 gatgtgcagt gtgctgcccg tggcagtcac aggtgaggcc agggggtatt tctgttttct
2401 gaagctcagc tgtgaagatt ctcttgtgct tcccacacag gtgtcaaaag gctggaaagc
2461 agttggcatg ggcggcccac cttggagaag gaacgagaga agaactcagc acccccgcat
2521 cgcagggctc agaaggtcat gatccgctcc agcagtgaca gcagctacat gtctgggtcc
2581 ccagggggaa gtcctgggag tggcagtgct gagaagccgt cctctgacgt ggacatcagc
2641 acacacagcc ccagcttgcc tttggcacgg gagccagtgg tgctttttat agcatcctcc
2701 aggctgcccc aggagagccc acccctccca gagagccggg acagccaccc gccgctgaga
2761 ctgaagaaat cctttgagat tttggtgaga aagcctatgt cctccaagcc caagcctccc
2821 ccagcaaaaa aaaaaaaaaa aaaaaaaaaa aaa
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