LOCUS BC040213 4743 bp mRNA linear HTC 23-JUL-2007
DEFINITION Homo sapiens dachshund homolog 2 (Drosophila), mRNA (cDNA clone
IMAGE:4821068), with apparent retained intron.
ACCESSION BC040213
VERSION BC040213.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4743)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4743)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 71 Row: c Column: 16
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..4743
/db_xref="H-InvDB:HIT000096070"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4821068"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
BASE COUNT 1495 a 901 c 855 g 1492 t
ORIGIN
1 agcacagatt cacagtccac tctccagagc tggtacctct gttataaagg agcggatccc
61 agagagtcct tctcctgctc cttctctaga agagaatcat cgtcctggga gccagacctc
121 ttcccacacc agcagcagtg tgtccagctc tccctctcag atggatcatc atttggaaag
181 aatggaagag gtaccagttc aaattccaat aatgaagtca cccttggaca agatacagct
241 gactcctggg caggcattgc ccgctggatt ccctggacca ttcatttttg ctgatagtct
301 gtcctccgtg gagactctgt tgaccaacat tcagggtctg ctgaaagttg ctttggataa
361 tgctcgcatc caggagaagc agattcaaca agaaaagaag gagctgcgac tggagctcta
421 tagagagaga gaaattagag aaaaccttga aagacaactt gcagttgagc ttcaaagcag
481 aactgctatg caaaagcgcc tgaagaagga aaaaaaaacc aagagaaaat tgcaggaagc
541 cttggaattt gaatcaaagc gccgggagca agtggagcag gcacttaagc aagccaccac
601 tagtgacagt ggcctgagga tgttaaaaga tactggaatt ccagatattg aaatagaaaa
661 caatgggact cctcatgata gtgctgctat gcaagcctga acactgatgc cggaactcca
721 actgatcata ggcacgaata gggtgctgta gcagttacct gcttatctag tgttgtaaat
781 tatttagaat tcatactcaa atccttaaaa tatggaacct ttaattactg tttgttcatt
841 actgataaat agaaccttac acatacagga aaaatgtcct agagaatggg tttcacaggt
901 ttttagggga tagtcataat aatgactgaa cacattttac acttctttaa cctctttctt
961 tcaaggagtt catagtgctt caaaaacatt atcacattaa ttcacacaga atcctagtgg
1021 ggtaagtagg tggaagaatt tttaagacag agaaaatgct atttctaaat ggtgtgagac
1081 aaattaaaat gcaggaacac ctactttaag ctgcaattac tgtgaaataa cttcttgtct
1141 gacctggtat ttaacaggaa ttatatcagg tggtgaatca tttgtgcaaa tgatcgatat
1201 ttgttatcac tgctttggag ctctcatttc taaaagaaac acttggcctg tagtgttctc
1261 taagaaaata taaggagctc tagtttttag attttaccac acccagtttt tcctttgaac
1321 tgttgatggt ggagcaagtc ctttaacccc tttctactag cacattcctg atttgtaaag
1381 aatgcaatga taaaaacaga tacccaagct gctaaaaata cccctttact attttcttct
1441 ctcctcccat ccccaatctt gcttcctctt tattaagcta ttaacaagca aacagaatga
1501 aaaatctata ggcataagaa aagagaaaga tgggtcagtg agattatgga tattttatac
1561 tgttcactct ctggtctaga catagccaga ttcctaacat gttcaaatga ttaggaacat
1621 ttggcttgaa ttgcccagga aatggcctca aatattttta actgtttact tagaggagat
1681 ctgaccattg gctgggggca gatacctgtt atcattattt tgatgcctac taaaaatcta
1741 atagagcagc attccaatgt gttatatggt actctaatga tcaaaaagat ttaatgctcc
1801 tcctaaagtg ccctccttat attaaacaat atataatcca ttgtgttgtt ttcacgtctg
1861 ccctagcatt aagttctgat gtgacagaag caccaagcat ctcctgcaaa aagccaactg
1921 agtttttatc cattttctag taagaggttc cccatggcag tacatgcaat ttctgccgga
1981 atggccaccc actctaaaca cttaaaaata ttacattaat tcatatcgat gtgacatttc
2041 agtaattcca agctctgaag gaatgttttc taaagcataa gcatttggat tctggtattc
2101 ttcatgggct gtagaaggtc tgcttatata gagtaggtat actgttttag cccaattcag
2161 tgaaataatg ccaaattaga aataagtcat ggagaaggat tgaagcaagt caaataaaaa
2221 cttttattaa tatcaaatat ctgaaataaa taacagtgac aggtgactaa aaatataaca
2281 tccaagaaag tctcatcatt aaatggaatt tccaaattaa gttacttcaa aataaactag
2341 tgtcttttgt ttaaataagt agataagttt aacttacctt gtttgaacta tgaggactcc
2401 tcatgtgtat ttttttctgg ccttttccaa tatatctgcc ttgtttatga tacatgattt
2461 tagctattcc ggctcatagg cttaggatat ataccacagg gcaagtctca catttacttg
2521 agtttggagc agctatttgt ggcccagtaa agataactca actgattagg agaggttcat
2581 ctcctgtgtg gagtgtccac actgaccttc tgtgtcatgg catatgccca tgtcaggcag
2641 tgctgtgcta aaggaaggat tacatggact tttgttttta ctttaaaaat ggtcacattt
2701 gtatgtatca aattcccctt tttacctatc tgataaatcc caaagcaata aactctgtca
2761 gctctcccca aatgtcagcg tgtgtccctc tttttaagtt ctcaagctca gtaacattcc
2821 cctggagaga ctttgttagt ttctcttcct gatctttaat cttattgaca tccagagttc
2881 atatcagatc atctctgttt agagctcaag aacaaaccct tataagaaca tgaaacattc
2941 cattactaat tagctgtttc ctgttcctaa tgaagcgagc acactgagtc tggattaaaa
3001 ttcagctact actcctctct gtttatggtt ccagatgttt ttggtttatg taggagatta
3061 ctttgacagc tactactaag tgataaatca ctcatattat agctgaaatg cattttgaaa
3121 ttgaaatgtg gcaaactttg agattgctcc aaggatcagt gtcagcagtt cattactggc
3181 atcttcctta tgatcattca gcattggcac atgtaaaaca gtaaccaaat atgtgtcaac
3241 attatacaac atgctacaca ggggtctgtt tcgctactgt cctcaaaatt gggagaaaaa
3301 gttttactac ggtgaaatct caatttattg tattctggta gaaaagttga ttcacttaat
3361 attgttttct tcttgctagc ctagtttttc tttcaatttt tgaggagcta tgggaactat
3421 tcctaatagg ccttgtaagc agacacataa aggatgtggg caaatattta tgtctctaaa
3481 taaaggcaag aaataaacat aacaaaagta gaaatttttc agaaactgca tttttctaaa
3541 ggacaaatgg tgattgtctt tcgctattca ttgctgagtt catgtaccct ttttaagggg
3601 acatagtgtg tgctattgct ttccagtttg taatgttcac agtttgtgtt gcatgattta
3661 agctttagct atattgtata aatttcaatc ctggtaaaat gactgtcatt tcatgtcaaa
3721 gagctttcct ttgacattta ggctgtgtat acaaaggatg aggtagactg gaggactgag
3781 caaatatttg gtcaattcat cagagtaaat attctcagac tccacaaagg agttggaaca
3841 attaccagtg tccaaaaatt caagctttgt tttcttctgg tccctggaaa agtttaagtg
3901 aattccatgg gcttcttggg aaaatgtctg gttgccctct gatgaagtcc aaccctccat
3961 aagtctgact aacccaaacc ccaaatcttt tattcatcta ttaccttact acatctttat
4021 ttttggttct gaggtattat ctagaaaatt ctgccactca ccatgatacc ttatacacag
4081 aaagaataaa gattttaaag atattataca caaggttaaa aaagggtata ctttcctcct
4141 aataagcttg accagattga cttaatattt tagattagac atattagtcc aacaatgata
4201 atgtcctctc cattatatgt gaaaataaag cacttgactc agaaacatta tctttaagta
4261 tttctcaagc acaggtaatg gatttgtacg gattcatcca catttctttt cctacttctt
4321 ttgtaaccaa aagccaatct ttgtgatgta tctaaataga gactcaggtt ataagccatt
4381 gctatggaaa ataacaaggt ttgacaaaaa gaggtagaat aaattttttt ttaaaaattt
4441 ccaacaataa cttttaccca cccaaattaa atattatcta actctaggat ggcatgggct
4501 cttttaatga ctatcattta gagggatacc ggtttgacta aacactgtag ctgaaacgat
4561 attccaaact agtctccctt catgcagtat acacagtctc agggttaacc cgggagagga
4621 aattttaaat gtacaaagct gtcattatct tagatcataa ccagatactc ttttccccct
4681 gttttggtaa accacaggga tggtatttca gatgcaccat tatatacaaa aaaaaaaaaa
4741 aaa
//