LOCUS BC040207 4532 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens neural precursor cell expressed, developmentally
down-regulated 9, mRNA (cDNA clone MGC:41852 IMAGE:4820745),
complete cds.
ACCESSION BC040207
VERSION BC040207.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4532)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4532)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 71 Row: c Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 33667052.
FEATURES Location/Qualifiers
source 1..4532
/db_xref="H-InvDB:HIT000052344"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:41852 IMAGE:4820745"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4532
/gene="NEDD9"
/gene_synonym="CAS-L"
/gene_synonym="CASL"
/gene_synonym="dJ49G10.2"
/gene_synonym="dJ761I2.1"
/gene_synonym="HEF1"
/gene_synonym="neural"
/db_xref="GeneID:4739"
/db_xref="HGNC:HGNC:7733"
/db_xref="MIM:602265"
CDS 154..2658
/gene="NEDD9"
/gene_synonym="CAS-L"
/gene_synonym="CASL"
/gene_synonym="dJ49G10.2"
/gene_synonym="dJ761I2.1"
/gene_synonym="HEF1"
/gene_synonym="neural"
/codon_start=1
/product="neural precursor cell expressed, developmentally
down-regulated 9"
/protein_id="AAH40207.1"
/db_xref="GeneID:4739"
/db_xref="HGNC:HGNC:7733"
/db_xref="MIM:602265"
/translation="MKYKNLMARALYDNVPECAEELAFRKGDILTVIEQNTGGLEGWW
LCSLHGRQGIVPGNRVKLLIGPMQETASSHEQPASGLMQQTFGQQKLYQVPNPQAAPR
DTIYQVPPSYQNQGIYQVPTGHGTQEQEVYQVPPSVQRSIGGTSGPHVGKKVITPVRT
GHGYVYEYPSRYQKDVYDIPPSHTTQGVYDIPPSSAKGPVFSVPVGEIKPQGVYDIPP
TKGVYAIPPSACRDEAGLREKDYDFPPPMRQAGRPDLRPEGVYDIPPTCTKPAGKDLH
VKYNCDIPGAAEPVARRHQSLSPNHPPPQLGQSVGSQNDAYDVPRGVQFLEPPAETSE
KANPQERDGVYDVPLHNPPDAKGSRDLVDGINRLSFSSTGSTRSNMSTSSTSSKESSL
SASPAQDKRLFLDPDTAIERLQRLQQALEMGVSSLMALVTTDWRCYGYMERHINEIRT
AVDKVELFLKEYLHFVKGAVANAACLPELILHNKMKRELQRVEDSHQILSQTSHDLNE
CSWSLNILAINKPQNKCDDLDRFVMVAKTVPDDAKQLTTTINTNAEALFRPGPGSLHL
KNGPESIMNSTEYPHGGSQGQLLHPGDHKAQAHNKALPPGLSKEQAPDCSSSDGSERS
WMDDYDYVHLQGKEEFERQQKELLEKENIMKQNKMQLEHHQLSQFQLLEQEITKPVEN
DISKWKPSQSLPTTNSGVSAQDRQLLCFYYDQCETHFISLLNAIDALFSCVSSAQPPR
IFVAHSKFVILSAHKLVFIGDTLTRQVTAQDIRNKVMNSSNQLCEQLKTIVMATKMAA
LHYPSTTALQEMVHQVTDLSRNAQLFKRSLLEMATF"
BASE COUNT 1284 a 1102 c 1045 g 1101 t
ORIGIN
1 agtgacttga gggaggcgct gcgactgaca agcggctctg cccgggacct tctcgctttc
61 atctagcgct gcactcaatg gaggggcggg caccgcagtg cttaatgctg tcttaactag
121 tgtaggaaaa cggctcaacc caccgctgcc gaaatgaagt ataagaatct tatggcaagg
181 gccttatatg acaatgtccc agagtgtgcc gaggaactgg cctttcgcaa gggagacatc
241 ctgaccgtca tagagcagaa cacaggggga ctggaaggat ggtggctgtg ctcgttacac
301 ggtcggcaag gcattgtccc aggcaaccgg gtgaagcttc tgattggtcc catgcaggag
361 actgcctcca gtcacgagca gcctgcctct ggactgatgc agcagacctt tggccaacag
421 aagctctatc aagtgccaaa cccacaggct gctccccgag acaccatcta ccaagtgcca
481 ccttcctacc aaaatcaggg aatttaccaa gtccccactg gccacggcac ccaagaacaa
541 gaggtatatc aggtgccacc atcagtgcag agaagcattg ggggaaccag tgggccccac
601 gtgggtaaaa aggtgataac ccccgtgagg acaggccatg gctacgtata cgagtaccca
661 tccagatacc aaaaggacgt ctatgatatc cctccttctc ataccactca aggggtatac
721 gacatccctc cctcatcagc aaaaggccct gtgttttcag ttccagtggg agagataaaa
781 cctcaagggg tgtatgacat cccgcctaca aaaggggtat atgccattcc gccctctgct
841 tgccgggatg aagcagggct tagggaaaaa gactatgact tcccccctcc catgagacaa
901 gctggaaggc cggacctcag accggagggg gtttatgaca ttcctccaac ctgcaccaag
961 ccagcaggga aggaccttca tgtaaaatac aactgtgaca ttccaggagc tgcagaaccg
1021 gtggctcgaa ggcaccagag cctgtccccg aatcacccac ccccgcaact cggacagtca
1081 gtgggctctc agaacgacgc atatgatgtc ccccgaggcg ttcagtttct tgagccacca
1141 gcagaaacca gtgagaaagc aaacccccag gaaagggatg gtgtttatga tgtccctctg
1201 cataacccgc cagatgctaa aggctctcgg gacttggtgg atgggatcaa ccgattgtct
1261 ttctccagta caggcagcac ccggagtaac atgtccacgt cttccacctc ctccaaggag
1321 tcctcactgt cagcctcccc agctcaggac aaaaggctct tcctggatcc agacacagct
1381 attgagagac ttcagcggct ccagcaggcc cttgagatgg gtgtctccag cctaatggca
1441 ctggtcacta ccgactggcg gtgttacgga tatatggaaa gacacatcaa tgaaatacgc
1501 acagcagtgg acaaggtgga gctgttcctg aaggagtacc tccactttgt caagggagct
1561 gttgcaaatg ctgcctgcct cccggaactc atcctccaca acaagatgaa gcgggagctg
1621 caacgagttg aagactccca ccagatcctg agtcaaacca gccatgactt aaatgagtgc
1681 agctggtccc tgaatatctt ggccatcaac aagccccaga acaagtgtga cgatctggac
1741 cggtttgtga tggtggcaaa gacggtgccc gatgacgcca agcagctcac cacaaccatc
1801 aacaccaacg cagaggccct cttcagaccc ggccctggca gcttgcatct gaagaatggg
1861 ccggagagca tcatgaactc aacggagtac ccacacggtg gctcccaggg acagctgctg
1921 catcctggtg accacaaggc ccaggcccac aacaaggcac tgcccccagg cctgagcaag
1981 gagcaggccc ctgactgtag cagcagtgat ggttctgaga ggagctggat ggatgactac
2041 gattacgtcc acctacaggg taaggaggag tttgagaggc aacagaaaga gctattggaa
2101 aaagagaata tcatgaaaca gaacaagatg cagctggaac atcatcagct gagccagttc
2161 cagctgttgg aacaagagat tacaaagccc gtggagaatg acatctcgaa gtggaagccc
2221 tctcagagcc tacccaccac aaacagtggc gtgagtgctc aggatcggca gttgctgtgc
2281 ttctactatg accaatgtga gacccatttc atttcccttc tcaacgccat tgacgcactc
2341 ttcagttgtg tcagctcagc ccagcccccg cgaatcttcg tggcacacag caagtttgtc
2401 atcctcagtg cacacaaact ggtgttcatt ggagacacgc tgacacggca ggtgactgcc
2461 caggacattc gcaacaaagt catgaactcc agcaaccagc tctgcgagca gctcaagacc
2521 atagtcatgg caaccaagat ggccgccctc cattacccca gcaccacggc cctgcaggaa
2581 atggtgcacc aagtgacaga cctttctaga aatgcccagc tgttcaagcg ctctttgctg
2641 gagatggcaa cgttctgaga agaaaaaaaa gaggaagggg actgcgttaa cggttactaa
2701 ggaaaactgg aaatactgtc tggtttttgt aaatgttatc tatttttgta gatattttat
2761 ataaaaatga aatattttaa cattttatgg gtcagtcaac tttcagaaat tcagggagct
2821 ggagagggaa atcttttttt ttccccctga gtggttctta tgtacataga ggtatctgag
2881 acataaactg tacagaaaac ttgtccacgt gcttttgtat gcccatgtat tcatgtttgt
2941 ttgtagatgt ttgtctgatg catttcatta aaaaaaaaac catgaattac gaagcacctt
3001 agtaagcacc tcctaatgct gcattttttt tgttgttgtt aaaaacatac cagctggtta
3061 taatattgtt ctccacgtcc ttgtgatgat tctgagcctg gcactcccaa atctgggaag
3121 catagtttat ttgcaagtgt tcaccttcca aatcatgagg catagcatga cttattcttg
3181 tttggaaaac tcttttcaaa actgaccatc ttaaacacat gatggccaag tgcccaaaag
3241 ccctcttgcg gagcaaattt cagaatatat atgtggatcc aagctctgat agttcaggtg
3301 ctggagggaa gagagacctg tgtgtttaga ggccaggacc acagttagga ttgggttgtt
3361 tcaatactga gagacagcta caataaaagg agagcaattg cctccctggg gctgttcaat
3421 cttctgcatt tgtgagtggt tcagtcatga ggttttccaa aagatgtttt tagagttgta
3481 aaaaccatat ttgcagcaaa gatttacaaa ggcgtatcag actatgattg ttcaccaaaa
3541 taggggaatg gtttgatccg ccagttgcaa gtagaggcct ttctgactct taatattcac
3601 tttggtgcta ctacccccat tacctgaggg aaactggcca ggtccttgat catggaacta
3661 tagagctacc aggacatatc ctgctctcta agggaattta ttgctatctt gcaccttctt
3721 taaaactcac atatgcagac ctgacactca agagtggcta gctacacaga gtccatctaa
3781 tttttgcaac ttcctgtggc cagtgtgtat aaccccttcc actatctcac agatagtcac
3841 agcgtccatt ccatagtctg tctcctcaca tctgttagta ttgacacagc acagacacca
3901 caagccatca ggttcttcat ggggcaggtg aaatacttct accccatggg taaatgtatt
3961 cacatattac caagagaaga agcacattat ctatgatctt ttggcccagt tcttatttag
4021 catttttatt ccagcctact tggaaacatg tttttatttg caatatatgc ctgactgaat
4081 taagcttgct tgttttaaac aaccaaatca ttggaacaga aaaggattta aaaaacaaga
4141 atgcatgatc tcagagtgat taaaaaaaaa tcagtggaaa taaatgatca tagaaggtgc
4201 ttttcaaaac aactgctatt ataattctca aagtcctact ctgccaaaag aagattaaaa
4261 gtcatacatt acattacaag gaaatgttca tgtgggaaga gggttgctga aaatcaacaa
4321 cgcttgaagt taaaaagtgt gtctttgtag atttcattgt ataatgtgta tttcttagga
4381 gatggctgac ttgattgatc tacgctaagt ggagacattt cacattttta aaaccaaatg
4441 ttcaatctgt attactcttt gccgtcttgt atgtagaggc tatttttaaa tcattaaatt
4501 tttagatctc tgttttcaaa aaaaaaaaaa aa
//