LOCUS BC040143 3297 bp mRNA linear HUM 02-NOV-2004 DEFINITION Homo sapiens RAB5B, member RAS oncogene family, mRNA (cDNA clone IMAGE:6046989), partial cds. ACCESSION BC040143 VERSION BC040143.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3297) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3297) AUTHORS Director MGC Project. TITLE Direct Submission JOURNAL Submitted (22-NOV-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 84 Row: o Column: 2 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 33943097. FEATURES Location/Qualifiers source 1..3297 /db_xref="H-InvDB:HIT000096019" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:6046989" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_72" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene <1..3297 /gene="RAB5B" /db_xref="GeneID:5869" /db_xref="MIM:179514" CDS <1..806 /gene="RAB5B" /codon_start=3 /product="RAB5B protein" /protein_id="AAH40143.1" /db_xref="GeneID:5869" /db_xref="MIM:179514" /translation="LSCSCLSVRHRLGADGGDGAPGVLKPGNPLPFPLPPLQYPPPST LSHSDNLAMTSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQE STIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETF ARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKT AMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDLHEQSQQNKSQCCSN" BASE COUNT 775 a 854 c 743 g 925 t ORIGIN 1 ggttgagctg cagctgtttg tctgttcgac acaggcttgg ggccgacggg ggagacggag 61 ccccaggagt gttgaagcct ggaaatcccc tccccttccc cctcccccct ttacagtatc 121 cccctccctc caccctttcc cattctgata atctggccat gactagcaga agcacagcta 181 ggcccaatgg gcaaccccag gccagcaaaa tttgccagtt caaattggtc ctgctgggag 241 aatctgcagt gggaaagtca agcctggtat tacgttttgt caaagggcag ttccatgagt 301 accaggagag caccattgga gcggccttcc tcacccagtc cgtttgtcta gatgacacaa 361 cagtgaagtt tgagatctgg gacacagctg ggcaggagcg atatcacagc ttagccccca 421 tgtactacag gggtgcccaa gctgcaatcg tggtttacga cattactaat caggaaacct 481 ttgcccgagc aaagacatgg gtgaaggaac tacagcgaca ggccagtcct agcatcgtta 541 ttgccctggc agggaacaaa gctgacctgg ccaacaaacg tatggtggag tatgaagagg 601 cccaggcata tgcagatgac aacagcttat tgttcatgga gacttcagcc aagacagcta 661 tgaacgtgaa tgatctcttc ctggcaatag ctaagaagtt gccaaagagt gaaccccaga 721 atctgggagg tgcagcaggc cgaagccggg gtgtggatct ccatgaacag tcccagcaga 781 acaagagcca gtgttgtagc aactgagggg gtggctagca gcaaacaagt atggagctag 841 cacaagagct aagaaataac ctccatccct acccctcagc acacaacccc tacggtaaca 901 gcacactgag ccctggctcc caagggctgc ctcctgacag ctccgtcatg gcacttttta 961 acgcttcagc aacaaacacc aggcagctgt tgccactggc ctcctacccc ctactctggg 1021 gcttgggggt caactccccc caggacttac cttccaaaac aaactttctt cactttgtat 1081 tataggtaca agacagcgac ttacgtatct tttctcctcc tccctagtgt tcctccccat 1141 tttttcagaa aacacttctg actcctgtcc cttccccttc tgcttttggt cagtccctgt 1201 tcttgagcct cttttctcct ctccccagga tgcagaaagt ggtgaaccca ggaactgagg 1261 aaggaggttt ccagttcatt tacattaagg gccctggggg agaataaagc tcagagcagg 1321 agggagtaag gaaacatttc ctttttgttt ttatttggtt ggagtttctc atatttgaaa 1381 acattgcggt atccatgatt tggccttgtg gagggtgttc ctaggtagag gtgagaatgg 1441 ggaggcaaga tctcaggcac caggcaggag gtgccttgta agctaactgg gcggaggtgg 1501 aggtgcagtg tcaactgtgg ctctgtaact cttcaaaggc ccagtttccc ctcacgcagc 1561 ctcttaggta gcgtttcccc taatcgtggg ggttggaccc cagagtcttc caaagaattt 1621 tcactggttg cctgcatctt tggctctgct gtgatctgat tggaggaggg acagtttctg 1681 gtacccatcc tctgatttat acatatgcat tttttcccct ctggccttta gatggcctca 1741 gccccagcca ccatataccc ctgcagtttg cactttaatt gatggtagtt cagttggggt 1801 acttgtttta tggaagtttt gattgattta cttgccctcc caccttcttt ttaattcaat 1861 gaaatctgag gttaatgcga ggttcgagga gaggttatag ataaaactac cagtggcagc 1921 tactcaagtc ctatctccac tgttagcttc ctccaactct aattattaac ctatattctt 1981 gccaagctaa ctattgacta taggtttgcc tttcctggag aattaattga gcaattgagg 2041 agtgtctcag gatagcacag gccaaggtag gggagtaaaa aggaggtcag gcaaaaggga 2101 ggagttttct gtcctttccc aggtttcaca ctcaatttga tatccattac catgtctttt 2161 ctacttcctt gtaaataggt atgatcttta ttcccactgt acagtctgtt ctatcctctg 2221 cctcccatca ggccctgttt ctttgttcct ttgttaatat cttgaattta gtccctccat 2281 ccttaatccc cccatccctc cccatcatgc aaccagtggt ttaatccatg taccaatagg 2341 ggctagtacc acagaggcct cctgtggtgc cctcgtatca taccacctgt tcctgtggag 2401 agggaatgac cggcactgaa ggtaccttac aactggctca tattatcaga ggaccttggt 2461 cctttctaaa tctctagtct ctcttcatat ccttcatcag gtgttttaag atgtctctga 2521 gaagccatca aggcaaaaga gaactttaag ttccttgttc cagcccggag ttttgggaaa 2581 gaaagaaagg aaaggtcaca gtgacctagg attggaacct tcctgccctt ttggcttgca 2641 gactgccttc tatcccagaa cagctgagaa atctatgaag ctgagattct gaaggaccca 2701 gcttaggttc ttccacttag gcctcaattc ccttcctttt ccaggggcag ccttagttcc 2761 catggccctg aaacacacac atttccccct tcctttccca gaagccactg gccccccata 2821 gcacccagtg catccttttt acaagtggaa gaactaggat ggctttccaa agtcttctag 2881 aaatgaagtt ctttctctgt gcagctttcc cccttggagc aggagtgaag atgtttcatt 2941 atcttgggcc tgggaaacca cttccccagg cttctccctc cccccacccc cataggaaca 3001 ggatttggcc ttagcttctg ggcctatcgg ctgccttccc tctacttcct accacctctt 3061 ctgccttcct ttgagctctg ttgggcttgg ggatcttagt tttcttttgt ttatttccca 3121 gctcattttt ttcttctggt cagttttttt aagggggggt gttgtggttt tttgtttttg 3181 ttttgcttct gagaaagcat ttgcctttct tcctctccca acataacaat cgtggtaaca 3241 gaatgcgact gctgatttac cgatgtattt aatgtaagta aaaaaaaaaa aaaaaaa //