LOCUS BC040117 2026 bp mRNA linear HTC 13-APR-2006
DEFINITION Homo sapiens piggyBac transposable element derived 1, mRNA (cDNA
clone IMAGE:5184895), with apparent retained intron.
ACCESSION BC040117
VERSION BC040117.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2026)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2026)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 84 Row: d Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 25777740
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..2026
/db_xref="H-InvDB:HIT000096001"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5184895"
/tissue_type="Colon, Kidney, Stomach, adult, whole pooled"
/clone_lib="NIH_MGC_116"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
BASE COUNT 595 a 471 c 511 g 449 t
ORIGIN
1 ccggcagcgc ccgccagacc cgccagccca gcggcccggg ctctggggaa accggcgctc
61 ccgacagggg agcaccgggc ctctgagctc cctcgggagc ctttcacgag gtcagctacg
121 tctttgttgt gcgcgttcct gaacttttgg tccattaacc aacaattaga cacgccggta
181 ttcagtgcct ggcgcggtgc tagatgctgg gtgtaatctc agaaaaatac attcaggggc
241 gcgcctgagg gtgctggctg ctggcatctc aggtgcttta cgtgcattcg tgaagaagcc
301 catcagtatt tcttgaatac cagatctcta tttctgaata tagaccccaa gctaagtgaa
361 gctttagcct ctaagctcaa catgtatgaa gctttgccag gccctgctcc tgaaaatgaa
421 gatggccttg tgaaagtgaa ggaggaagat cccacctggg agcaggtgtg caactcacag
481 gagggcagct cccacactca ggagatttgc cgcctgcgct ttcggcactt ctgctaccag
541 gaggctcacg gaccccagga agctctggcc caactccgag aactttgtca tcaatggctg
601 agaccggaga tgcacaccaa ggaacagata atggaactgc tggtgctgga gcagttcctg
661 accatcctgc ccaaggagct ccagccctgt gtgaagacat atcctctgga gagtggagag
721 gaggcagtga cagtgctgga gaatctagag acaggaagtg gagacacagg acaacaggcc
781 tctgtctata ttcagggaca ggacatgcac ccaatggtgg cagaatatca aggagtctct
841 ttggagtgtc agagcctcca gctcctgcct gggataacca ccctgaagtg tgaacctcca
901 cagcgtcctc aagggaaccc ccaagaagtg agtgggcctg ttccccacgg atcagctcat
961 ctccaggaaa aaaaccccag agacaaggct gtagtgcctg tgtttaaccc agtcaggtcc
1021 cagacattgg tgaagactga ggaagaaaca gcccaggccg ttgctgcaga gaagtggtca
1081 catctgagtc tgactcggag gaacctctgt gggaactcag ctcaggagac agttatgagc
1141 ctcagtccga tgactgaaga aattgtaact aaagatagat tgtttaaagc aaagcaagaa
1201 acttctgaag aaatggaaca aagtggagaa gcctcaggaa agcccaacag agagtgtgca
1261 ccccagattc cttgtagtac tcctattgct actgaaagga cagttgcaca tttgaacact
1321 ctgaaggacc gtcacccagg tgatttgtgg gcccgcatgc acatctcatc cctggaatat
1381 gctgcaggag acattacccg aaaagggaga aaaaaagaca aagctcgagt gagtgaactg
1441 ctccaaggcc tctcattctc tggtgactca gatgtggaaa aagataatga gcctgagatc
1501 cagcctgctc aaaagaagtt aaaggtatca tgtttcccag aaaagagttg gaccaaaaga
1561 gacattaaac ccaattttcc aagctggtca gcactggatt ctggactttt gaatctcaag
1621 agcgaaaagt tgaacccagt agagcttttt gaattatttt ttgatgatga aacattcaac
1681 ttaattgtca atgaaaccaa taattatgct tctcagaaaa atgtcagctt ggaagtcaca
1741 gttcaggaaa tgaggtgtgt gtttggtgtc ttacttttga gtggatttat gaggcatcct
1801 agaagggaaa tgtattggga agtctctgac accgatcaga acctggttag agatgcaatc
1861 agaagggaca gatttgaatt gattttctca aacctgcact ttgcagataa tggccaccta
1921 gatcaaaaag ataagtttac aaagttgaga cctctcataa aacaaatgaa taaaaatttc
1981 ctcttgtatg ctcccctgga aaaaaaaaaa aaaaaaaaaa aaaaaa
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