LOCUS BC040003 2036 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens t-complex 11 homolog (mouse), mRNA (cDNA clone
MGC:48765 IMAGE:5741923), complete cds.
ACCESSION BC040003
VERSION BC040003.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2036)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2036)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 84 Row: j Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31543802
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..2036
/db_xref="H-InvDB:HIT000095951"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48765 IMAGE:5741923"
/tissue_type="Brain, adult medulla"
/clone_lib="NIH_MGC_119"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2036
/gene="TCP11"
/db_xref="GeneID:6954"
/db_xref="HGNC:HGNC:11658"
/db_xref="MIM:186982"
CDS 458..1780
/gene="TCP11"
/codon_start=1
/product="TCP11 protein"
/protein_id="AAH40003.1"
/db_xref="GeneID:6954"
/db_xref="HGNC:HGNC:11658"
/db_xref="MIM:186982"
/translation="MNCDYYMEEKVLPPSSLEGKVKETVHNAFWDHLKEQLSATPPDF
SCALELLKEIKEILLSLLLPRQNRLRIEIEEALDMDLLKQEAEHGALKVLYLSKYVLN
MMALLCAPVRDEAVQKLENITDPVWLLRGIFQVLGRMKMDMVNYTIQSLQPHLQEHSI
QYERAKFQELLNKQPSLLNHTTKWLTQAAGDLTMSPPTCPDTSDSSSVAGPSPNEAAN
NPEPLSPTMVLCQGFLNLLLWDLENEEFPETLLMDRTRLQELKSQLHQLTVMASVLLV
ASSFSGSVLFGSPQFVDKLKRITKSLLEDFHSRPEEAILTVSEQVSQEIHQSLKNMGL
VALSSDNTASLMGQLQNIAKKENCVCSVIDQRIHLFLKCCLVLGVQRSLLDLPGGLTL
IEAELAELGQKFVNLTHHNQQVFGPYYTEILKTLISPAQALETKVESV"
BASE COUNT 602 a 510 c 467 g 457 t
ORIGIN
1 ggcccaccga gcggacgcca gtggatgacc cgcggcgggg aggaggagat accatcagca
61 aaatgccaga cgtcaaggag agtgtgcccc cgaaatatcc tggcgactca gagggcaggt
121 cctgtaagcc cgaaacctca ggaccccccc aggaagacaa gagcggctcc gaggaccccc
181 ctccctagaa cgtaactagt catcaaactg aggagctgtc cgtgtgcaac aactcaagat
241 aaaattcttg actattgaaa tgcgaaaaat tagattgagg ctttgcggct gaattagatt
301 ggtttttctt gtggccacat gaggtcgctg ctggttaact gaatggcacc aaaaggcata
361 ttggggtcat ttccaacagc tatgaacctg agttctttct gtcacaggtc tgacagaaac
421 cgttaatgaa gtttccaagc tgagcaacaa gattgggatg aattgtgatt actacatgga
481 agagaaggtt ttacctccaa gcagtctgga aggcaaggtc aaggagacag tgcacaatgc
541 cttttgggac catcttaaag agcaactatc agcaactccc cctgacttca gctgtgctct
601 tgaacttctg aaagaaatta aagagatctt gctatcactg ctattaccac gccagaaccg
661 cctgagaatt gagattgaag aagctctgga catggacttg ctcaagcagg aggcagaaca
721 tggggccctg aaagtcctct atctctctaa gtacgttctc aacatgatgg ctttgctgtg
781 tgcaccagtt cgagatgaag cagtgcagaa actagaaaac attacggatc ctgtttggct
841 actgagaggg atcttccagg ttctgggccg gatgaaaatg gacatggtga actacactat
901 ccagagcctt caaccccacc tgcaggaaca ttccattcag tatgaacggg ctaaattcca
961 ggaactcctc aataagcagc ctagtctcct taatcacacc accaaatggc tgacccaagc
1021 agcaggagac ctcaccatgt cacctccgac ttgcccagac acttctgact cctccagtgt
1081 ggctggcccc tctcccaatg aggcagccaa caacccagag cccctcagcc ccacaatggt
1141 gctgtgtcag ggcttcttga acctccttct ctgggacctt gaaaatgaag agttccctga
1201 gaccctgctg atggacagaa cccggctgca ggagctgaag tcccagttgc accagttaac
1261 cgtcatggcc tcagtcttgc tggtggccag tagtttctcc ggcagtgttt tgtttggctc
1321 accccaattt gtagataaac tgaaacgcat aaccaaatcc ttgttggaag actttcactc
1381 caggcctgag gaagctatac tgactgtgag tgaacaggta tctcaggaaa tccatcaaag
1441 cctcaagaat atgggccttg ttgctctaag cagtgataat acagcatctc taatgggaca
1501 gctccagaac attgccaaga aggagaactg tgtctgcagt gttattgatc agcggatcca
1561 tttgtttctc aaatgctgtt tggttcttgg tgtgcagcgg tctctattag accttcctgg
1621 aggccttact ctcattgaag cagaactggc agaactgggc caaaagtttg tcaacttgac
1681 acatcacaat cagcaggtgt ttggtcccta ctacactgag atcctaaaaa ccctcatttc
1741 cccagcccag gcactggaaa caaaagtgga gtctgtttga tagcgtcggc tcagagccct
1801 ggtaccttgg acccaagagg aggcccatca tcttcctgga gtaacatcac cagtgaccag
1861 cagacagtga gcttctatcc caggccctgc agccagtaca ccaaggctgt agggatcaag
1921 catgtaaaca ccaactggtc catacccatt cattaataaa cttcttaagt gcaaaaaaaa
1981 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//