LOCUS BC039904 3791 bp mRNA linear HUM 25-NOV-2003 DEFINITION Homo sapiens histone deacetylase 4, mRNA (cDNA clone MGC:47583 IMAGE:6067363), complete cds. ACCESSION BC039904 VERSION BC039904.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3791) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3791) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (15-NOV-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 82 Row: p Column: 7 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 13259519. FEATURES Location/Qualifiers source 1..3791 /db_xref="H-InvDB:HIT000052290" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:47583 IMAGE:6067363" /tissue_type="Testis, embryonal carcinoma" /clone_lib="NIH_MGC_92" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3791 /gene="HDAC4" /gene_synonym="HA6116" /gene_synonym="HD4" /gene_synonym="HDAC-A" /gene_synonym="HDACA" /gene_synonym="KIAA0288" /db_xref="GeneID:9759" /db_xref="MIM:605314" CDS 396..3314 /gene="HDAC4" /gene_synonym="HA6116" /gene_synonym="HD4" /gene_synonym="HDAC-A" /gene_synonym="HDACA" /gene_synonym="KIAA0288" /codon_start=1 /product="HDAC4 protein" /protein_id="AAH39904.1" /db_xref="GeneID:9759" /db_xref="MIM:605314" /translation="MLAMKHQQELLEHQRKLERHRQEQELEKQHREQKLQQLKNKEKG KESAVASTEVKMKLQEFVLNKKKALAHRNLNHCISSDPRYWYGKTQHSSLDQSSPPQS GVSTSYNHPVLGMYDAKDDFPLRKTASEPNLKLRSRLKQKVAERRSSPLLRRKDGPVV TALKKRPLDVTDSACSSAPGSGPSSPNNSSGSVSAENGIAPAVPSIPAETSLAHRLVA REGSAAPLPLYTSPSLPNITLGLPATGPSAGTAGQQDAERLTLPALQQRLSLFPGTHL TPYLSTSPLERDGGAAHSPLLQHMVLLEQPPAQAPLVTDWYLSGLGALPLHAQSLVGA DRVSPSIHKLRQHRPLGRTQSAPLPQNAQALQHLVIQQQHQQFLEKHKQQFQQQQLQM NKIIPKPSEPARQPESHPEETEEELREHQALLDEPYLDRLPGQKEAHAQAGVQVKQEP IESDEEEAEPPREVEPGQRQPSEQELLFRQQALLLEQQRIHQLRNYQASMEAAGIPVS FGGHRPLSRAQSSPASATFPVSVQEPPTKPRFTTGLVYDTLMLKHQCTCGSSSSHPEH AGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSK KLLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGF AVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFY SDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAA FRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGLAGGRI VLALEGGHDLTAICDASEACVSALLGNELDPLPEKVLQQRPNANAVRSMEKVMEIHSK YWRCLQRTTSTAGRSLIEAQTCENEEAETVTAMASLSVGVKPAEKRPDEEPMEEEPPL " misc_feature 2022..2993 /gene="HDAC4" /gene_synonym="HA6116" /gene_synonym="HD4" /gene_synonym="HDAC-A" /gene_synonym="HDACA" /gene_synonym="KIAA0288" /note="HisDeac1; Region: RPD3 like Histone decetylase domain" /db_xref="CDD:LOAD_HisDeac1" BASE COUNT 866 a 1198 c 1117 g 610 t ORIGIN 1 ccacgcgtcc ggacgctgga gtggggagaa gcatcatggt tcaacgttca tctgcagaag 61 ccagcggacg cctctgttca acttgtgggt tacctggctc atgagacctt gccggcgagg 121 ctcggcgctt gaacgtctgt gacccagccc tcaccgtccc ggtacttgta tgtgttggtg 181 ggagtttgga gctcgttgga gctatcgttt ccgtggaaat tttgagccat ttcgaatcac 241 ttaaaggagt ggacattgct agcaatgagc tcccaaagcc atccagatgg actttctggc 301 cgagaccagc cagtggagct gctgaatcct gcccgcgtga accacatgcc cagcacgagg 361 cgcagctcca cgagcacatc aagcaacaac aggagatgct ggccatgaag caccagcagg 421 agctgctgga acaccagcgg aagctggaga ggcaccgcca ggagcaggag ctggagaagc 481 agcaccggga gcagaagctg cagcagctca agaacaagga gaagggcaaa gagagtgccg 541 tggccagcac agaagtgaag atgaagttac aagaatttgt cctcaataaa aagaaggcgc 601 tggcccaccg gaatctgaac cactgcattt ccagcgaccc tcgctactgg tacgggaaaa 661 cgcagcacag ttcccttgac cagagttctc caccccagag cggagtgtcg acctcctata 721 accacccggt cctgggaatg tacgacgcca aagatgactt ccctcttagg aaaacagctt 781 ctgaaccgaa tctgaaatta cggtccaggc taaagcagaa agtggccgaa agacggagca 841 gccccctgtt acgcaggaaa gacgggccag tggtcactgc tctaaaaaag cgtccgttgg 901 atgtcacaga ctccgcgtgc agcagcgccc caggctccgg acccagctca cccaacaaca 961 gctccgggag cgtcagcgcg gagaacggta tcgcgcccgc cgtccccagc atcccggcgg 1021 agacgagttt ggcgcacaga cttgtggcac gagaaggctc ggccgctcca cttcccctct 1081 acacatcgcc atccttgccc aacatcacgc tgggcctgcc tgccaccggc ccctctgcgg 1141 gcacggcggg ccagcaggac gccgagagac tcacccttcc cgccctccag cagaggctct 1201 cccttttccc cggcacccac ctcactccct acctgagcac ctcgcccttg gagcgggacg 1261 gaggggcagc gcacagccct cttctgcagc acatggtctt actggagcag ccgccggcac 1321 aagcacccct cgtcacagac tggtatcttt caggcctggg agcactgccc ctccacgcac 1381 agtccttggt tggtgcagac cgggtgtccc cctccatcca caagctgcgg cagcaccgcc 1441 cactggggcg gacccagtcg gccccgctgc cccagaacgc ccaggctctg cagcacctgg 1501 tcatccagca gcagcatcag cagtttctgg agaaacacaa gcagcagttc cagcagcagc 1561 aactgcagat gaacaagatc atccccaagc caagcgagcc agcccggcag ccggagagcc 1621 acccggagga gacggaggag gagctccgtg agcaccaggc tctgctggac gagccctacc 1681 tggaccggct gccggggcag aaggaggcgc acgcacaggc cggcgtgcag gtgaagcagg 1741 agcccattga gagcgatgag gaagaggcag agcccccacg ggaggtggag ccgggccagc 1801 gccagcccag tgagcaggag ctgctcttca gacagcaagc cctcctgctg gagcagcagc 1861 ggatccacca gctgaggaac taccaggcgt ccatggaggc cgccggcatc cccgtgtcct 1921 tcggcggcca caggcctctg tcccgggcgc agtcctcacc cgcgtctgcc accttccccg 1981 tgtctgtgca ggagcccccc accaagccga ggttcacgac aggcctcgtg tatgacacgc 2041 tgatgctgaa gcaccagtgc acctgcggga gtagcagcag ccaccccgag cacgccggga 2101 ggatccagag catctggtcc cgcctgcagg agacgggcct ccggggcaaa tgcgagtgca 2161 tccgcggacg caaggccacc ctggaggagc tacagacggt gcactcggaa gcccacaccc 2221 tcctgtatgg cacgaacccc ctcaaccggc agaaactgga cagtaagaaa cttctaggct 2281 cgctcgcctc cgtgttcgtc cggctccctt gcggtggtgt tggggtggac agtgacacca 2341 tatggaacga ggtgcactcg gcgggggcag cccgcctggc tgtgggctgc gtggtagagc 2401 tggtcttcaa ggtggccaca ggggagctga agaatggctt tgctgtggtc cgcccccctg 2461 gacaccatgc ggaggagagc acgcccatgg gcttttgcta cttcaactcc gtggccgtgg 2521 cagccaagct tctgcagcag aggttgagcg tgagcaagat cctcatcgtg gactgggacg 2581 tgcaccatgg aaacgggacc cagcaggctt tctacagcga ccccagcgtc ctgtacatgt 2641 ccctccaccg ctacgacgat gggaacttct tcccaggcag cggggctcct gatgaggtgg 2701 gcacagggcc cggcgtgggt ttcaacgtca acatggcttt caccggcggc ctggaccccc 2761 ccatgggaga cgctgagtac ttggcggcct tcagaacggt ggtcatgccg atcgccagcg 2821 agtttgcccc ggatgtggtg ctggtgtcat caggcttcga tgccgtggag ggccacccca 2881 cccctcttgg gggctacaac ctctccgcca gatgcttcgg gtacctgacg aagcagctga 2941 tgggcctggc tggcggccgg attgtcctgg ccctcgaggg aggccacgac ctgaccgcca 3001 tttgcgacgc ctcggaagca tgtgtttctg ccttgctggg aaacgagctt gatcctctcc 3061 cagaaaaggt tttacagcaa agacccaatg caaacgctgt ccgttccatg gagaaagtca 3121 tggagatcca cagcaagtac tggcgctgcc tgcagcgcac aacctccaca gcggggcgtt 3181 ctctgatcga ggctcagact tgcgagaacg aagaagccga gacggtcacc gccatggcct 3241 cgctgtccgt gggcgtgaag cccgccgaaa agagaccaga tgaggagccc atggaagagg 3301 agccgcccct gtagcactcc ctcgaagctg ctgttctctt gtctgtctgt ctctgtcttg 3361 aagctcagcc aagaaacttt cccgtgtcac gcctgcgtcc caccgtgggg ctctcttgga 3421 gcacccaggg acacccagcg tgcaacagcc acgggaagcc tttctgccgc ccaggcccac 3481 aggtctcgag acgcacatgc acgcctgggc gtggcagcct cacagggaac acgggacaga 3541 cgccggcgac gcgcagacac acggacacgc ggaagccaag cacactctgg cgggtcccgc 3601 aagggacgcc gtggaagaaa ggagcctgtg gcaacaggcg gccgagctgc cgaattcagt 3661 tgacacgagg cacagaaaac aaatatcaaa gatctaataa tacaaaacaa acttgattaa 3721 aactggtgct taaagtttat tacccacaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 3781 aaaaaaaaaa a //