LOCUS BC039879 1215 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens tRNA selenocysteine 1 associated protein 1, mRNA (cDNA
clone MGC:46069 IMAGE:5769935), complete cds.
ACCESSION BC039879
VERSION BC039879.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1215)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1215)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 79 Row: p Column: 6
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..1215
/db_xref="H-InvDB:HIT000052280"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:46069 IMAGE:5769935"
/tissue_type="Brain, fetal, whole pooled"
/clone_lib="NIH_MGC_121"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1215
/gene="TRNAU1AP"
/gene_synonym="PRO1902"
/gene_synonym="RP4-669K10.4"
/gene_synonym="SECP43"
/db_xref="GeneID:54952"
/db_xref="HGNC:HGNC:30813"
CDS 491..1024
/gene="TRNAU1AP"
/gene_synonym="PRO1902"
/gene_synonym="RP4-669K10.4"
/gene_synonym="SECP43"
/codon_start=1
/product="TRNAU1AP protein"
/protein_id="AAH39879.1"
/db_xref="GeneID:54952"
/db_xref="HGNC:HGNC:30813"
/translation="MLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRAL
TECQGAVGLGSKPVRLSVAIPKASRVKPVEYSQMYSYSYNQYYQQYQNYYAQWGYDQN
TGSYSYSYPQYGYTQSTMQTYEEVGDDALEDPMPQLDVTEANKEFMEQSEELYDALMD
CHWQPLDTVSSEIPAMM"
BASE COUNT 388 a 259 c 313 g 255 t
ORIGIN
1 cggtgcgcgg gtatggcggc cagcctgtgg atgggcgacc tggaacccta catggatgag
61 aacttcatct ccagagcctt tgccaccatg ggggagaccg taatgagcgt caaaattatc
121 cgaaaccgcc tcactgggat cccagctggc tactgctttg tagaatttgc agatttggcc
181 acagctgaga agtgtttgca taaaattaat gggaaacccc ttccaggagc cacaccttta
241 cttagcttac agctgcacca gctggcacac ctgggctcat agaaccatgg agctggcagt
301 gcccttagcg gtcatccgtg caaccccctc attttataca ggagaaaaag ctgaggctta
361 gagaggggga gatgttttgg ccaaggcgaa acgttttaaa ctgaactatg ccacttacgg
421 gaaacaacca gataacagcc ctgagtattc cctctttgtg ggggacctga ccccggacgt
481 ggatgatggc atgctgtatg aattcttcgt caaagtctac ccctcctgtc ggggaggcaa
541 ggtggttttg gaccagacag gcgtgtctaa gggttatggt tttgtgaaat tcacagatga
601 actggaacag aagcgagccc tgacggagtg ccagggagca gtgggactgg ggtctaagcc
661 tgtgcggctg agcgtggcaa tccctaaagc gagccgtgta aagccagtgg aatatagtca
721 gatgtacagt tatagctaca accagtatta tcagcagtac cagaactact atgctcagtg
781 gggctatgac cagaacacag gcagctacag ctacagttac ccccagtatg gctataccca
841 gagcaccatg cagacatatg aagaagttgg agatgatgca ttggaagacc ccatgccaca
901 gctggatgtg actgaggcca acaaggagtt catggaacag agtgaggagc tgtatgacgc
961 tctgatggac tgtcactggc agcccctgga cacagtgtct tcagagatcc ctgccatgat
1021 gtagccaggc caaaggacaa gccaggttgc atgatgtgag ggagatgaga gactcctttt
1081 taaaaattgt gaaacctttt tggaaatatg atttgtaaga ttttaataat gaaaaaaaaa
1141 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1201 aaaaaaaaaa aaaaa
//