LOCUS BC039831 1775 bp mRNA linear HUM 24-JUL-2006
DEFINITION Homo sapiens intraflagellar transport 52 homolog (Chlamydomonas),
mRNA (cDNA clone MGC:48784 IMAGE:6095634), complete cds.
ACCESSION BC039831
VERSION BC039831.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1775)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1775)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 84 Row: p Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 56676378.
FEATURES Location/Qualifiers
source 1..1775
/db_xref="H-InvDB:HIT000052261"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48784 IMAGE:6095634"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1775
/gene="IFT52"
/gene_synonym="CGI-53"
/gene_synonym="dJ1028D15.1"
/gene_synonym="NGD5"
/db_xref="GeneID:51098"
/db_xref="HGNC:HGNC:15901"
CDS 130..1443
/gene="IFT52"
/gene_synonym="CGI-53"
/gene_synonym="dJ1028D15.1"
/gene_synonym="NGD5"
/codon_start=1
/product="intraflagellar transport 52 homolog
(Chlamydomonas)"
/protein_id="AAH39831.1"
/db_xref="GeneID:51098"
/db_xref="HGNC:HGNC:15901"
/translation="MEKELRSTILFNAYKKEIFTTNNGYKSMQKKLRSNWKIQSLKDE
ITSEKLNGVKLWITAGPREKFTAAEFEILKKYLDTGGDVFVMLGEGGESRFDTNINFL
LEEYGIMVNNDAVVRNVYHKYFHPKEALVSSGVLNREISRAAGKAVPGIIDEESSGNN
AQALTFVYPFGATLSVMKPAVAVLSTGSVCFPLNRPILAFYHSKNQGGKLAVLGSCHM
FSDQYLDKEENSKIMDVVFQWLTTGDIHLNQIDAEDPEISDYMMLPYTATLSKRNREC
LQESDEIPRDFTTLFDLSIFQLDTTSFHSVIEAHEQLNVKHEPLQLIQPQFETPLPTL
QPAVFPPSFRELPPPPLELFDLDETFSSEKARLAQITNKCTEEDLEFYVRKCGDILGV
TSKLPKDQQDAKHILEHVFFQVVEFKKLNQEHDIDTSETAFQNNF"
BASE COUNT 569 a 386 c 370 g 450 t
ORIGIN
1 ccgcccacgc gtccgccacg cctcccggcg caccgacgcg cctctccggt tactaagcgg
61 ccttggatac ctggccgcgg gatgctgggc ggcgtcaggt gagcggtggt cgctgggcct
121 caggtaacca tggagaaaga gctgcggagc accattcttt tcaatgccta caaaaaggag
181 atatttacca ccaacaatgg ctacaaatcc atgcagaaaa aacttcggag taattggaag
241 attcagagct taaaagatga aatcacatct gagaagttaa atggagtaaa actgtggatt
301 acagctgggc caagggaaaa atttactgca gctgagtttg aaatcctgaa gaaatatctt
361 gacactggtg gagatgtctt tgtgatgcta ggagaaggtg gagaatccag atttgacacc
421 aatattaact ttttactaga agaatatgga atcatggtta ataatgatgc tgtggttaga
481 aatgtatatc acaaatattt ccatcctaaa gaagctctag tttccagtgg agtcttgaac
541 agggaaatta gccgagctgc aggaaaggct gtgcctggga tcattgatga ggaaagcagt
601 ggaaacaatg cccaggctct cacctttgtg tatccttttg gtgccacatt gagtgtcatg
661 aaaccagcag tggcggttct gtctacaggt tctgtctgct tcccacttaa cagacccatt
721 ttggctttct atcactcaaa gaaccaaggt gggaagctgg cagtgcttgg ttcatgtcac
781 atgttcagtg atcaatattt ggacaaagaa gaaaacagca aaatcatgga tgttgttttc
841 cagtggctca cgacaggaga catccaccta aaccagattg atgctgagga cccagagatt
901 tctgactaca tgatgctgcc ctacacagcc accctatcaa agcggaatcg agagtgtctc
961 caggagagtg atgagatccc aagggacttt accaccctct tcgacctgtc catcttccag
1021 ctggatacca cctccttcca cagcgtcatc gaggctcacg agcagctaaa tgtgaaacat
1081 gaaccactcc agctcatcca gcctcagttt gagacgccgc tgccaaccct tcagcctgcg
1141 gtttttcctc ccagtttccg ggagttacca cctcctcctc tggagctatt tgatttagat
1201 gaaacgttct cctctgagaa ggcacggctg gctcagatta ccaataagtg tactgaagaa
1261 gacctggaat tttatgtcag gaagtgtggt gatattcttg gagtaaccag taaactacca
1321 aaggaccaac aggatgccaa acatatcctt gagcacgtct tcttccaagt ggtggagttc
1381 aagaaattga accaggaaca tgacatcgat acaagtgaaa cagcattcca gaacaatttc
1441 tgaagaccat gcctcttgaa gctttttctg cctcctgatt ctctctttgt aaactatttt
1501 caaattgttt ttcaactcct tatcaaaatt gtttatacac tctttcctcc atgagctctg
1561 gaaggtatat gcatcttctg taatactcag ataggtataa gatttttcac aaaatcctta
1621 tgtaagatac attccatttt taaaaattaa atgtatggtt gcatctgtct ttttataccc
1681 taaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1741 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//