LOCUS BC039315 4431 bp mRNA linear HUM 26-JUN-2007
DEFINITION Homo sapiens EF-hand calcium binding domain 6, mRNA (cDNA clone
MGC:39806 IMAGE:5297436), complete cds.
ACCESSION BC039315
VERSION BC039315.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4431)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4431)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 63 Row: n Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38570108.
FEATURES Location/Qualifiers
source 1..4431
/db_xref="H-InvDB:HIT000095589"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39806 IMAGE:5297436"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4431
/gene="EFCAB6"
/gene_synonym="dJ185D5.1"
/gene_synonym="DJBP"
/gene_synonym="HSCBCIP1"
/db_xref="GeneID:64800"
/db_xref="HGNC:HGNC:24204"
CDS 266..4315
/gene="EFCAB6"
/gene_synonym="dJ185D5.1"
/gene_synonym="DJBP"
/gene_synonym="HSCBCIP1"
/codon_start=1
/product="EF-hand calcium binding domain 6"
/protein_id="AAH39315.1"
/db_xref="GeneID:64800"
/db_xref="HGNC:HGNC:24204"
/translation="MNCCRTLRELEIQVGEKVFKNIKTVMKAFELIDVNKTGLVRPQE
LRRVLETFCMKLRDEEYEKFSKHYNIHKDTAVDYNVFLKNLSINNDLNLRYCMGNQEV
SLENQQAKNSKKERLLGSASSEDIWRNYSLDEIERNFCLQLSKSYEKVEKALSAGDPC
KGGYVSFNYLKIVLDTFVYQIPRRIFIQLMKRFGLKATTKINWKQFLTSFHEPQGLQV
SSKGPLTKRNSINSRNESHKENIITKLFRHTEDHSASLKKALLIINTKPDGPITREEF
RYILNCMAVKLSDSEFKELMQMLDPGDTGVVNTSMFIDLIEENCRMRKTSPCTDAKTP
FLLAWDSVEEIVHDTITRNLQAFYNMLRSYDLGDTGRIGRNNFKKIMHVFCPFLTNAH
FIKLCSKIQDIGSGRILYKKLLACIGIDGPPTVSPVLVPKDQLLSEHLQKDEQQQPDL
SERTKLTEDKTTLTKKMTTEEVIEKFKKCIQQQDPAFKKRFLDFSKEPNGKINVHDFK
KVLEDTGMPMDDDQYALLTTKIGFEKEGMSYLDFAAGFEDPPMRGPETTPPQPPTPSK
SYVNSHFITAEECLKLFPRRLKESFRDPYSAFFKTDADRDGIINMHDLHRLLLHLLLN
LKDDEFERFLGLLGLRLSVTLNFREFQNLCEKRPWRTDEAPQRLIRPKQKVADSELAC
EQAHQYLVTKAKNRWSDLSKNFLETDNEGNGILRRRDIKNALYGFDIPLTPREFEKLW
ARYDTEGKGHITYQEFLQKLGINYSPAVHRPCAEDYFNFMGHFTKPQQLQEEMKELQQ
STEKAVAARDKLMDRHQDISKAFTKTDQSKTNYISICKMQEVLEECGCSLTEGELTHL
LNSWGVSRHDNAINYLDFLRAVENSKSTGAQPKEKEESMPINFATLNPQEVVRKIQEV
VESSQLALSTAFSALGKEDTGFVKATEFGQVLKDFCYKLTDNQYHYFLRKLRIHLTPY
INWKYFLQNFSCFLEETADEWAEKMPKGPPPTSPKATADRDILARLHKAVTSHYHAIT
QEFENFDTMKTNTISREEFRAICNRRVQILTDEQFGRLWNEMPVNAKGRLKYPDFLSR
FSSETAATPMATGDSAVAQRGSSVPDVSEGTRSALSLPTQELRPGSKSQSHPCTPAST
TVIPGTPPLQNCDPIESRLRKRIQGCWRQLLKECKEKDVARQGDINASDFLALVEKFN
LDISKEECQQLIIKYDLKSNGKFAYCDFIQSCVLLLKAKESSLMHRMKIQNAHKMKEA
GAETPSFYSALLRIQPKIVHCWRPMRRTFKSYDEAGTGLLSVADFRTVLRQYSINLSE
EEFFHILEYYDKTLSSKISYNDFLRAFLQ"
BASE COUNT 1395 a 979 c 1022 g 1035 t
ORIGIN
1 ggggaatcga ggaggggttc ccgggctcat cgcagaggat tggaagggcc tagattactg
61 cccaatgaca aaagtgtggg cttaatgtcc tcactcttca gggagagaat gtggacttta
121 gcatttgaac tgaatatttg agattgaaga tttctgaata atccacctta gcacctctgg
181 tactgtaccg taccttgcct ttctgtccag gtttggtgga attgacctat atataaatgg
241 tataaagagg ggaggtggga atgaaatgaa ttgctgccgc acattaagag aacttgaaat
301 ccaagtggga gaaaaggttt tcaaaaacat taagactgtt atgaaagcct ttgagctcat
361 tgatgttaac aagactggac tggttcgacc gcaggagcta agaagggttc tggagacctt
421 ctgtatgaag ttaagagacg aggaatacga aaagttttcg aaacactaca acatccacaa
481 ggatactgca gtagattaca acgtgttttt gaagaatctc agcataaata acgacttgaa
541 ccttagatat tgtatgggaa atcaagaggt ctcattggag aatcaacaag ccaaaaattc
601 caaaaaggaa cgtttgctag gttctgcatc atctgaagat atctggagaa actactcctt
661 ggatgaaatt gagaggaact tttgtctaca actttcgaag tcttatgaaa aggttgaaaa
721 ggccctcagt gcaggggacc cctgtaaagg tggctacgtg tcttttaatt atctaaagat
781 tgtcctcgac acttttgtat accaaatacc aagaagaatt tttatccagt taatgaaaag
841 atttggactt aaagccacca ctaaaatcaa ttggaagcaa tttctaacat catttcatga
901 gcctcagggg ttgcaagtta gcagtaaagg tcccctgaca aaaagaaata gcatcaactc
961 tagaaatgaa tctcacaagg aaaacatcat cacaaagtta tttagacaca ctgaagatca
1021 ctctgcgtca ctgaagaaag cattactgat aatcaacact aaacccgatg gaccgataac
1081 aagagaagaa tttcgatata ttctaaattg catggctgta aaactaagcg attcagaatt
1141 caaagaacta atgcaaatgc ttgaccctgg ggacactgga gtggtcaaca ccagcatgtt
1201 tattgatctg attgaagaga actgtaggat gagaaagaca tctccctgta cagatgctaa
1261 gacacctttc ctcctggcct gggattcagt ggaagaaatt gttcatgata caattactag
1321 gaacctacaa gctttttata acatgctacg ctcatatgac cttggagaca cagggcgcat
1381 tggccgaaat aatttcaaga aaatcatgca cgtcttctgt ccatttttaa cgaatgcaca
1441 tttcataaaa ctctgcagta agattcagga cattggttca ggaagaatcc tttacaagaa
1501 acttttggca tgcataggaa ttgatggccc acccactgtc tctccagttc ttgttccaaa
1561 ggatcagctg ttaagtgaac atttacaaaa agatgaacag cagcagccag atctttctga
1621 gagaaccaag ctcacggagg ataaaaccac cctgaccaag aagatgacca cagaagaagt
1681 gattgaaaaa ttcaaaaagt gtatacagca gcaggacccg gcattcaaaa aacgatttct
1741 tgacttcagc aaggagccta atggaaaaat taacgtgcat gactttaaga aggtactgga
1801 agacactggg atgcccatgg acgatgatca gtatgccctg ctgaccacta aaataggctt
1861 cgagaaggaa gggatgagct atcttgattt tgcagcagga tttgaagatc ctccaatgag
1921 agggccggaa accactccgc cgcagcctcc aactccttca aaaagttacg tgaacagcca
1981 ctttatcacc gcagaagaat gcctgaagct tttccctagg aggctgaagg agtcattccg
2041 ggacccctac tctgccttct ttaaaacaga tgctgacagg gatggcataa tcaacatgca
2101 tgaccttcac agactgctcc tgcatctact gcttaatctc aaagacgacg agtttgagcg
2161 cttccttggc cttcttggct tgagacttag tgtcacttta aattttcggg aatttcaaaa
2221 tttgtgtgag aagagaccat ggagaacaga tgaagcgcct caaagactca ttagaccaaa
2281 acagaaggtt gcggattcag aactagcttg tgagcaggct catcagtatc ttgttaccaa
2341 agcaaaaaac agatggtcag acttgtctaa gaattttcta gaaaccgata atgagggcaa
2401 tggcattctt cgacgccggg acataaagaa cgcactgtac ggttttgata ttcccctcac
2461 accaagagag tttgaaaagc tttgggcaag atacgacacc gagggaaaag ggcacattac
2521 ttaccaggaa tttttacaga aattgggtat taactattcg cctgctgtcc atcggccctg
2581 tgcagaggat tatttcaact tcatgggtca ttttacaaag ccacagcagc tacaggaaga
2641 gatgaaggag ctgcagcaga gcacagagaa ggctgtggca gccagggata agcttatgga
2701 ccgccatcaa gatatcagca aagcattcac caaaactgat caatccaaaa ccaactacat
2761 atccatatgc aagatgcagg aagtgctgga agaatgtgga tgttctctta ccgaagggga
2821 gctgacccat ctgctaaaca gttggggagt cagccggcat gataatgcta tcaattacct
2881 cgacttcctg agagcagtgg agaacagcaa gtcaacagga gctcagccca aggaaaaaga
2941 agagagcatg ccaatcaatt ttgcaacgct gaatccacag gaggttgtga ggaagatcca
3001 ggaagtagtt gagtcctccc agctggcttt gtccacggca ttttctgcat tgggtaaaga
3061 ggatacagga tttgtaaagg ctacagaatt cggacaagtt cttaaggatt tctgttacaa
3121 actaacggac aatcagtatc attatttttt gaggaaacta agaattcatc taacccccta
3181 tataaattgg aaatattttc tccagaactt tagctgtttc cttgaggaga cagctgatga
3241 gtgggctgag aaaatgccca aaggcccgcc gcctacctct cccaaggcca cagccgacag
3301 agacatcctg gctcgcctcc acaaagcagt gacttcccat taccatgcca tcacccagga
3361 gtttgagaat tttgacacca tgaaaacgaa caccatctcc agagaggagt ttagggccat
3421 ttgtaatcgc cgcgtccaaa tcctgacgga cgaacagttt ggcagactct ggaacgagat
3481 gccagtcaat gccaagggga ggctgaaata cccggacttc ctgagcaggt tcagttccga
3541 gacagcagcc acaccaatgg ccactggtga ctcggccgtg gcccagagag ggagcagtgt
3601 ccctgacgtc tcggaaggca ccagatctgc cctctcattg cccactcagg agctgagacc
3661 agggtcaaag tcgcagagcc acccctgtac tccagcgagc accaccgtga tcccgggcac
3721 tccacccttg cagaactgtg atcccataga gagcaggctc cggaagagaa tccagggctg
3781 ctggcgccag ctcctgaaag aatgcaagga gaaggacgtg gccagacagg gggacatcaa
3841 cgcctccgat ttcctggctc ttgtggagaa attcaacctg gacataagca aagaggagtg
3901 tcagcagctc attataaaat acgacttaaa gagcaacggg aaatttgcat actgtgactt
3961 cattcagagc tgtgtcctcc tgctaaaagc aaaggaaagc tcactgatgc acaggatgaa
4021 gatccagaat gcacacaaga tgaaagaagc cggcgcggag acgccatctt tttactctgc
4081 tctgctgcgt attcagccca aaattgtgca ctgctggagg ccaatgcggc gcacgttcaa
4141 aagctatgat gaggctggaa cagggctgct aagcgtcgca gatttcagga cggtcctgag
4201 acagtacagc atcaacctct ctgaggaaga gttcttccat attctggagt attacgataa
4261 gacgctgtct tcaaaaatct cctacaacga cttcctccgg gcattcctcc agtagacacc
4321 cctgctgtgt gcccagcggg acgacagcca cagggcctgt ttcaaggcta ataaaatcct
4381 ataatttggg ggtttcatga attttcaaaa aaaacaaaaa aaaaaaaaaa a
//