LOCUS BC039314 2158 bp mRNA linear HUM 28-JUL-2006
DEFINITION Homo sapiens 5'-3' exoribonuclease 1, mRNA (cDNA clone
IMAGE:5296715), complete cds.
ACCESSION BC039314
VERSION BC039314.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2158)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2158)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 63 Row: n Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40254886
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2158
/db_xref="H-InvDB:HIT000095588"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5296715"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2158
/gene="XRN1"
/gene_synonym="DKFZp434P0721"
/gene_synonym="SEP1"
/db_xref="GeneID:54464"
/db_xref="HGNC:HGNC:30654"
/db_xref="MIM:607994"
CDS 67..1446
/gene="XRN1"
/gene_synonym="DKFZp434P0721"
/gene_synonym="SEP1"
/codon_start=1
/product="XRN1 protein"
/protein_id="AAH39314.1"
/db_xref="GeneID:54464"
/db_xref="HGNC:HGNC:30654"
/db_xref="MIM:607994"
/translation="MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCS
HPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRF
RSAKEAEDKIKKAIEKGETLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKS
WQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHE
AHFSLLREEVRFGGKKTQRVCAPEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIE
RIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYGTYVTILPELGGYINESGHLNLP
RFEKYLVKLSDFDREHFSEVFVDLKWFESKVGNKYLNEAAGVAAEEARNYKEKKKLKG
QENSLCWTALDKNEGEMITSKDNLEDETEDDDLFETEFRQYKRTYYMTKMGVDVVSEY
VFANAFILK"
BASE COUNT 780 a 327 c 429 g 622 t
ORIGIN
1 ggcggagccc cggcggggcg tttggtttcg gtttggccct gactgggatt agtgttgacg
61 atcgaaatgg gagtccccaa gttttacaga tggatctcag agcggtatcc ctgtctcagc
121 gaagtggtga aagagcatca gattcctgaa tttgacaact tgtacctgga tatgaatgga
181 attatacatc agtgctccca tcctaatgat gatgatgttc actttagaat ttcagatgat
241 aaaatcttta ctgatatttt tcactacctg gaggtgttgt ttcgcattat taaacccagg
301 aaagtgttct ttatggctgt agatggtgtg gctcctcgag caaaaatgaa ccagcagcgt
361 gggaggcgtt ttaggtcagc aaaggaggca gaagacaaaa ttaaaaaggc aatagagaag
421 ggagaaactc ttcctacaga ggccagattt gattccaact gtatcacacc aggaactgaa
481 tttatggcca ggttacatga acatctgaag tattttgtaa atatgaaaat ttccacagac
541 aagtcatggc aaggagttac catctacttc tcaggccatg agactcctgg agaaggagag
601 cataaaatca tggaatttat cagatccgag aaagcaaagc cagatcatga tccaaacacc
661 agacactgtc tttatggttt agatgctgac ttgattatgc ttggattaac aagtcatgag
721 gcacattttt ctctcttaag agaagaagtt cgatttggtg gcaaaaaaac acaacgggta
781 tgtgctccag aagaaactac atttcacctt ctacacttgt ctttaatgag agagtatatt
841 gactatgagt tttcagtatt aaaagaaaag atcacattta aatatgatat tgaaaggata
901 atagatgatt ggattttgat ggggtttctt gttggtaatg attttatccc tcatctacct
961 catttacata ttaatcatga tgcactgcct cttctttatg gaacatatgt taccatcctg
1021 ccagaacttg ggggttatat taatgaaagt gggcacctca acttacctcg atttgagaaa
1081 taccttgtga aactatcaga ttttgatcgg gagcacttca gtgaagtttt tgtggaccta
1141 aaatggtttg aaagcaaagt tggtaacaag tacctcaatg aagcagcagg tgtcgcagca
1201 gaagaagcca ggaactacaa ggaaaagaaa aagttaaagg gccaggaaaa ttctctgtgt
1261 tggactgctt tagacaaaaa tgaaggcgaa atgataactt ctaaggataa tttagaagat
1321 gagactgaag atgatgacct atttgaaact gagtttagac aatataaaag aacatattac
1381 atgacgaaga tgggggttga cgtagtatct gagtacgttt ttgccaatgc ttttatttta
1441 aaatagaaaa aattagattt tgcagttatt cagaaaatat gattttgatg aagtagtggg
1501 agaaaaagga ttttttggtt tcatgaatta ttgtgtatgt ttcaactagt ctggttttgg
1561 agaagatggt attaattctg acttgtatta tattcctgtg ataaaaattg ctgaagagaa
1621 aatgatcctt atgtataagg atttttgtta caaagttgtt tataatagta aaaaaattag
1681 aaataatcta aatgtccaat aagaaggttc atcataattg gccactgctt cttcattaca
1741 gtcaccatct ctgtcacctc ttccatctcc ggaatctgca gaactgctaa actggtactt
1801 gcagaaagtt cataacaatt tggaaggatg cttatagtac attattaagt acaaattgta
1861 aaggcaagac atgaaatcat acatacagta tgctctcatt aaccttaaaa aaacctagat
1921 atagataaaa gactgaaaca ctaaaaatgt aaaagtgatg gctataagat gataaaaatg
1981 ctgttcttca ttgtccagat tttcactcct gaggaaatag ttcttttata ataaaaaagc
2041 aatatttttc atattaaaaa actacctccc agaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2101 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa
//