LOCUS BC039306 4494 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens paralemmin 2, mRNA (cDNA clone MGC:39604
IMAGE:5260371), complete cds.
ACCESSION BC039306
VERSION BC039306.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4494)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4494)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 63 Row: d Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 51783964.
FEATURES Location/Qualifiers
source 1..4494
/db_xref="H-InvDB:HIT000052190"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39604 IMAGE:5260371"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4494
/gene="PALM2"
/gene_synonym="AKAP2"
/db_xref="GeneID:114299"
/db_xref="HGNC:HGNC:15845"
CDS 83..1216
/gene="PALM2"
/gene_synonym="AKAP2"
/codon_start=1
/product="paralemmin 2"
/protein_id="AAH39306.2"
/db_xref="GeneID:114299"
/db_xref="HGNC:HGNC:15845"
/translation="MAEAELHKERLQAIAEKRKRQTEIEGKRQQLDEQILLLQHSKSK
VLREKWLLQGIPAGTAEEEEARRRQSEEDEFRVKQLEDNIQRLEQEIQTLESEESRIS
AKEQIILEKLKETEKSFKDFQKGFSSTDGAVYAMEINVEKDKQTGETKILSTSTIGPE
GVHQKGVKVYDDGTKVVYEVRSGGTVVENGVHKLSTKDVEELIQKAGQSSLGGGHVSE
RTVIADGSLSHPKEHMLCKEAKLEMVHKSRKDHSSGNPGQQAQAPSAAGPEANLDQPV
TMIFMGYQNIEDEEETKKVLGYDETIKAELVLIDEDDEKSLREKTVTDVSTIDGNAAE
LVSGRPVSDTTEPSSPEGKEESLATEPAPGTQKKKRCQCCVVM"
BASE COUNT 1391 a 892 c 938 g 1273 t
ORIGIN
1 cggtgcactc ggctccggga gaggcgagca gcgccggtga gccccgcagc agcgcacccg
61 gccgcggagc cccgcgatgg agatggcaga ggcggaattg cacaaggaaa ggctgcaagc
121 catagcagaa aaaagaaaga ggcagactga aatagaaggc aagcgacaac agcttgacga
181 gcagatactt ctgctgcagc attccaagtc caaagtgctt cgggagaaat ggctgctgca
241 gggcataccc gctggaactg ccgaagagga ggaagccagg aggcggcagt ctgaagagga
301 tgagttcaga gtcaagcaac ttgaagataa cattcagagg ctggagcaag aaatacaaac
361 gctagaaagt gaagagtccc ggatatctgc caaagagcaa atcatcctag agaaactgaa
421 ggaaacagaa aaatccttca aggactttca gaagggtttc tccagtacgg atggagctgt
481 gtacgccatg gaaattaatg tggagaaaga caaacaaaca ggagagacca agatcctctc
541 tacatctacc attggcccag agggggtcca tcagaaagga gtcaaagtct atgatgatgg
601 taccaaagta gtgtatgagg tgcgctcagg aggcaccgta gtagaaaatg gagtgcacaa
661 attaagcaca aaggatgtag aagagcttat tcagaaggct ggacaatcaa gcttaggagg
721 agggcacgtg tctgaaagga ctgtgattgc agatgggagc ctcagccatc ccaaggaaca
781 catgctctgc aaagaagcta agttagaaat ggtacataag tctaggaaag accattcttc
841 cgggaaccca gggcagcagg cccaagcccc cagcgctgca gggccggagg caaacttgga
901 tcagcccgtc accatgattt ttatgggcta ccaaaatatc gaggatgaag aggagacgaa
961 aaaggtgcta ggctatgatg aaaccatcaa ggctgaattg gtcctcattg atgaagatga
1021 tgagaagtca ttgagggaga agacagtgac ggacgtgtcc actattgacg ggaacgcggc
1081 tgagcttgtg tccgggaggc cggtctcaga caccacagag ccctcatccc cagaagggaa
1141 ggaagagagc ctagctacag agccagcccc aggtacccaa aagaaaaagc gctgtcaatg
1201 ctgtgttgtc atgtgaccac ttctttcttc tcctttcttc tgggcagcct gtactctcca
1261 ccactcacgt agacctcact gtaccactaa ctgcaatact gtgaactgga agcaaacacc
1321 tgccttgcct tgcagttgaa ttgctttgat ctctctcatt ttttttcgtt ttcctcacct
1381 gagagacaac gtgcatgtgt gtgcttcatt ctctccaaga acttgctttt cctctaaacc
1441 tttccttgtg tcttcaagag tgaatcactt ccttcctgct cgattggaat ggactcttcg
1501 tatcagccag tgatatggta gccttaactc acttgactgg aattgaaccc attggcactg
1561 ggggtttcat tttgtagtgt gttcctgtaa cgtagtcaca cactgccatg tctctggttt
1621 ctcacttgcc tcctttgctg tggatctttg tttttatatc ttgtgtggca aaatgctgtt
1681 ggctctagcc ggttgctagt gtagccaaaa gtggacctta cttagtctgt ccgatctagg
1741 gtgatgcttt ttgctgcctt acataagctt ccagattaca gtattgtgca ttcatggctt
1801 tctttctgtt aaaactgaaa tgaagtcaat gtagaagaac ccagagcttg tcacagctga
1861 aatgtaggga ctgattccat aacctgccca tcagcggttg tctctctttc tatggtttaa
1921 ccgatgaacc ctttatataa gaagcaccat tttaaaattt ctaaggacat gaaacaaaca
1981 ttgtttgaag catcagtagc aattgatctc caaacttagg caaattcaca agccttgttt
2041 ctattctctt aaaaaaatgt aaatttttat attgtttctt ttttctggat attttctggt
2101 catgttaatc tattttcaat gaggagatca tcttgagaag tatctttgca gtgaccatat
2161 ttctaaaaca gtctgtccaa cctacaatgg ttgccatgat gctcccactt catcatggat
2221 ggtgctgtaa tgcattaact gttcatctcc tccccagttg attacaaagc cttgcatcca
2281 tactcttttc tttctggccc catgagaaag agaatgtttt aggtaacttc aacttgtagg
2341 tttatctgcc cttcaaaaaa aaaaaacttt aaaaaacttt taaaaattaa gaaagaccta
2401 tcttctcaat gttaagcact taatttcata acaaatatta agtggcacat agctgagctt
2461 cttagggcat tgttttgttt ttagcttctg gagattccag aagagcaaag aatatttttt
2521 atctagaaca caatgaacag tttttgaaat accttctcag cactccccca aagcaaaaag
2581 ccacatatgt agtaaaacca aagggaaaca atttaataaa ataacaatag tatagtaatg
2641 aaataaagat ataacatgat tactggtttt aataagagtt atcttaactt taagttattt
2701 gcccatttat agcattgtta tgaattattc ataaaattat gtcccacagt atatagtttt
2761 gaaaaaacat atgatatact acatccagtc taacttctgt ggaaagtaga tcagaaaaaa
2821 taagatagtc ttgagagaat tttattatag aagctgtcta atttgaccta ttttgcttgc
2881 tcagtgctaa atctattgct ttttttaatc tcctggcttg aaattatatt tacttcaata
2941 ggaaaggtaa aaacatcagt ttttactttt caaagttaat tttctgaaat aattgcattt
3001 taatgagcac aaaatgggtc attttatttt tattatactc atcttgttta cacctataca
3061 taaacagaaa acgttaaaga agagaaaaat aaaggagcta agttctgctg ttgaagatta
3121 tttcatccaa ggcttggttt tgaataactg agggaaatat ctctaaatct caagttcatc
3181 aaagcagctg caatggaata aaattgctat tttatcgaga aacctggttt ggatgcttat
3241 aaattccgct actctcagct tcattttcct gagtacgtgg tcactgaagc atcatttaga
3301 cattacataa actggcatgc agataaacct atttacatag agggagaaaa cagtttcaat
3361 gtcttggaca atctgttatt ttaatgattt acttaagaaa gaaacaatct gaaagcttac
3421 catagcttat cttttctact cacttggaga ttcaagctat tcaatgtgag ttttaaaaag
3481 ttaagcacag ttagtgagtg aaatggtaga atgtagaacc tttaagcttg ctggttgata
3541 aacagaatca atcttccagg acagataatt ccctgaaggg acctatcctt gcataagtga
3601 actagttact catacagaaa atgatctgca catcttacta caacactaca cacaagaact
3661 aaaagattaa tgattatctg tattctcttc actaattact attatggggg aataatgatt
3721 agcaaattat atgaattcga gttctctcta tacttttatt agtaaagctt atcatttaat
3781 ggactgaagt aagatgtgtt acctttattc gagctatttg tagccacact aaatgaaggt
3841 gtgtttgaat atggcgcata tatttgcata tgtcccatca ttttcttgtc ataatgggga
3901 attcaggctt agccagtact tctatgggat gagacctata atcccaccta tagcagcaag
3961 taactaccct tcatgatgat agtgtacatg gagctgtgat tatgaacatg ctgcctttcg
4021 tgctgcaatt ggcattctct ctgtaaattt tattatgtgt ggtatcacac tctccaaaaa
4081 tgcagggtat ttggttacat aaccaaacta attaaagaat cagtaatgaa attgcaaaac
4141 catgatcttt tttgagctaa tgattagttg ggctttcctt taaaataata taatcaggcc
4201 gagtgcagcg gctcacacct gtaatctcgg cactttggaa gtccgcggcg ggtggttcac
4261 ctgaggtcgg gagttcaaga ccagcctgac caacatggag aaacccccat ctctactaaa
4321 aaaaaaatac aaaattagcc aggcgtgatg gcgcatgcct gtaatcccag ctactcggga
4381 gactgaggca ggagaatcgc ttgaacctgg gaggcagggg ttgcaatgag ccgagatgtg
4441 cactccagcc tgggcaacaa agagcgaaac tccatctcaa aaaaaaaaaa aaaa
//