LOCUS BC039296 3900 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens non-protein coding RNA 153, mRNA (cDNA clone
IMAGE:5261585), complete cds.
ACCESSION BC039296
VERSION BC039296.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3900)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3900)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 63 Row: d Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: GenomeScan gene prediction
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..3900
/db_xref="H-InvDB:HIT000095575"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5261585"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3900
/gene="NCRNA00153"
/gene_synonym="HT013"
/db_xref="GeneID:55857"
/db_xref="HGNC:HGNC:15865"
CDS 96..941
/gene="NCRNA00153"
/gene_synonym="HT013"
/codon_start=1
/product="NCRNA00153 protein"
/protein_id="AAH39296.1"
/db_xref="GeneID:55857"
/db_xref="HGNC:HGNC:15865"
/translation="MSRTLASAVPLSSPDYYERLGQLQHGLRDSEKKRLDLEKKLYEY
NQSDTCRVKLKYVKLKNYLKEICESEKKAHTRNQEYLKRFERVQAHVVHFTTNTEKLQ
KLKLEYETQIKKMLCSKDSLGLKEELTDEDREKVAVQEGINSGTAMSRGLYQPATIFM
GRQMSAILSMRDFSTEHKSPQPTKNFSIPDPHSHRQTAQSSNVTDSCVVQTSNDTQCL
NKSDNIDGKASLQIGEKTPVTASVLSEEEQTHCLEIGSNTRHGKSNLSEGKKSAELNS
PLRKD"
BASE COUNT 1281 a 715 c 818 g 1086 t
ORIGIN
1 gtttacccgc ggtgcatggt ggggcggtct ccttcggcaa ccccggccga acgggccacc
61 cagaggctgt gctgagctgg cgcagcggca gcagcatgag ccggaccctc gcatcggccg
121 tgcccctgtc gagtcccgac tactacgaga ggctgggcca actccagcac gggctgcggg
181 acagtgaaaa gaagagattg gacctggaaa agaaacttta tgaatataat cagtctgata
241 catgcagagt taagctgaaa tatgtaaaac taaagaatta tctgaaggaa atatgtgaat
301 ctgaaaagaa ggctcatact cgaaaccaag aatatttaaa gcgatttgag cgtgtccaag
361 ctcatgttgt acacttcacc acaaatacag agaagcttca aaaactgaag ctcgaatatg
421 agactcaaat taagaagatg ctatgctcaa aagatagcct gggactaaaa gaggaactga
481 cagatgaaga cagagaaaag gttgcagtgc aggaggggat taactcagga acagccatgt
541 caagaggatt gtatcaacca gcaacaatct ttatgggccg ccaaatgtca gccatcttaa
601 gcatgagaga tttcagtaca gagcacaaat ctccccagcc cacaaagaac ttttcaattc
661 ctgacccaca ttcacaccga cagacagccc agagcagtaa tgtgacagac agctgtgtag
721 tacaaactag taatgacaca cagtgcttaa ataagtctga caacatagat ggaaaggcat
781 ctcttcagat tggtgagaaa acgccagtca cagccagtgt attgtctgag gaggaacaaa
841 ctcattgctt ggagatagga agtaacacac gtcatggcaa gagtaattta tctgaaggca
901 aaaagtctgc tgaactcaat tccccgttac ggaaagatta agtccagaga acagaaccac
961 tgatttaaag tgtgacagtt ccagcggatc agagggagaa atactgacac gggaacatat
1021 tgaagttgag gaaaaaagag ccagcccgcc agtctctccg ataccagttt cagaatactg
1081 tgaatctgaa aataagtggt ctcaagagaa gcattctcct tgggaaggtg tttcagatca
1141 tcttgctcac agggaaccaa agtcacaaaa gcccttcaga aaaatgcagg aagaggagga
1201 ggaaagttgg agcaccagca gtgaccttac catttcaata agtgaagatg atctgatttt
1261 agagagccca gaaccacagc caaatccagg tggcaagatg gagggagaag atggaataga
1321 ggccttaaaa ttaatccatg ctgagcaaga aagagttgcc ctatccactg aaaaaaattg
1381 tattttgcaa accctaagct ctcctgattc agaaaaggaa tcctccacta acgcaccaac
1441 aagagaacct ggacaaacac cagactcaga cgtaccgagg gcacaggtgg gtcagcatgt
1501 tgccaccttg aaagaacatg ataattctgt caaagaagag gcaacagcat tattgagaaa
1561 agcccttaca gaagagtgtg gccgtaggtc agctattcac agtagtgaat catcttgcag
1621 cttgccatct attctgaatg acaatagtgg aataaaggaa gccaaacctg ctgtatggct
1681 caacagtgtt cctacaaggg aacaagaagt ttcaagtggc tgtggagaca agagcaagaa
1741 agaaaatgtg gctgcagata tcccaatcac agaaacagaa gcctatcagt tgctgaagaa
1801 ggccaccctt caggataata caaatcaaac tgaaaacagg tttcaaaaga cagatgcttc
1861 tgtgtcacac ttgtcaggtt tgaatattgg cagcggtgca ttcgagacaa agacagctaa
1921 caaaattgct tcggaagcta gtttttcatc tagtgaagga agtcctttgt caaggtaaag
1981 ttgtgaaagc ctttctgaat agcagcaaca agatgagaaa tgtcacagcg caatgaatta
2041 aactctggct gcgtattatt ttgttgtatg acttggaggg ttatggtttg ggtttttgtt
2101 tatctaaaat aacagttgaa actttagtct acctttgaaa atatttgcac cagagccaag
2161 tattgttttg cagctgttgt ttccttggtt taagactcaa ttgacacctc agtgaaccac
2221 aaattagcgt ctacagctgc tcgcagtagg actgcttaga gaccacacaa tggaggttgt
2281 cagaaaaagg gcagagagaa aacatcaggc cttaaaagaa ataaagtggc atgtttcttc
2341 tttttgtgac ggctaatata taaactagta attgctggat attcattttt attttcctct
2401 ttttttttaa ccaagtgttt aggctaggtt attctttcct tttctaatac tttcttgctt
2461 attttccata aagaacaaaa tttatctttt cacatttgtc aaactgtagc actcgcttct
2521 tgtaggtttt ttgagctgtg ataagagagt tgtgtgctga atttgtcatt aacataaaat
2581 actaatcaca gtagcttcag gtcacttaga atttatagat gggaatataa gccatcacct
2641 gatgaaatac cctactcttt tgctttgagc taaatattgt ttaaaatggc atagcaactt
2701 tccttttgga acagcattgc tcagtaaaaa ggtgtccttc agatgattat attacatttg
2761 aattaactgc ttgtctctga tgaaatttta gaacaggaac tttacatttc tagtataaca
2821 tataatgttc cataagagaa aatgatttga accagaaatg ctgaattttt taaatgaaaa
2881 aaatcctatt tttattcata ttttataaaa tacaatgttt ttagaacctg gagtatatta
2941 aaatgagatt gaatttctaa aattataagt tttagaaact tgacaagtta agttttagag
3001 aaataactca tttaattttc agaagttatt atttttaatg cctgagtttt cgtccatatt
3061 tttgaaggaa gtgggaggta aatgggacag gaagagtgtt aaagtattat gttattatga
3121 ttgtattata aattcaagtt ctaggtctcc taaaagaaag tttaaaagac agtaaattct
3181 acagataatt ttcagggccg aatgttacca tttggcttaa taatatatag aggcactaaa
3241 aaaactcact tcttcctaaa cagtctttac gtaggttctt tgggaaattt ttaaagacat
3301 tgagaaagca attggatttt gtaaaacatt tctcagtcta ataatttcac atcttgtcta
3361 tattttacta aactaaaatc aagcattttc ctccttcaaa ttgagacaga ggtattttgt
3421 tattagtatc gtttccgtat gaaattaatt tcctaataaa ttacaagtaa tctcatcatc
3481 ccctttaaga aaacaaaaaa aaaaaacaca caaaaaggcc ttgaaggaac tcttggttct
3541 aggcacttga taataatcca gtgatgaaaa ggtctgggtc cagagtgcgt gggtttggcg
3601 tgctgtttgt cacggtttgg ttcttgtgct gggcttggtg ttgttcatat gccaccctgg
3661 gctttggaga gctccagttt tgctgtttgt gctggattca ctgaaatttc ttagaggctt
3721 acatttaagg atcccactta ctgcagtcac tccttgtgct ttattgcttt tacaagtggt
3781 ctcgaaaccc ggtacttgag aataaacata acagtgcagt gctgctgtag cacttttaaa
3841 attcttcttt gctctatttt gtcagtgagc tgatgagcaa ccccaaaaaa aaaaaaaaaa
//