LOCUS BC039294 3885 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens ubiquilin 1, mRNA (cDNA clone MGC:39500
IMAGE:5263680), complete cds.
ACCESSION BC039294
VERSION BC039294.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3885)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3885)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 63 Row: e Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 16753204.
FEATURES Location/Qualifiers
source 1..3885
/db_xref="H-InvDB:HIT000052187"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39500 IMAGE:5263680"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3885
/gene="UBQLN1"
/gene_synonym="DA41"
/gene_synonym="DSK2"
/gene_synonym="PLIC-1"
/gene_synonym="XDRP1"
/db_xref="GeneID:29979"
/db_xref="HGNC:HGNC:12508"
/db_xref="MIM:605046"
CDS 266..2035
/gene="UBQLN1"
/gene_synonym="DA41"
/gene_synonym="DSK2"
/gene_synonym="PLIC-1"
/gene_synonym="XDRP1"
/codon_start=1
/product="ubiquilin 1"
/protein_id="AAH39294.1"
/db_xref="GeneID:29979"
/db_xref="HGNC:HGNC:12508"
/db_xref="MIM:605046"
/translation="MAESGESGGPPGSQDSAAGAEGAGTPAAAASAEPKIMKVTVKTP
KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTV
HLVIKTQNRPQDHSAQQTNTAGSNVTTSSTPNSNSTSGSATSNPFGLGGLGGLAGLSS
LGLNTTNFSELQSQMQRQLLSNPEMMVQIMENPFVQSMLSNHDLMRQLIMANPQMQQL
IQRNPEISHMLNNPDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMY
TDIQEPMLSAAQEQFGGNPFASLVSNTSSGEGSQPSRTENRDPLPNPWAPQTSQSSSA
SSGTASTVGGTTGSTASGTSGQSTTAPNLVPGVGASMFNTPGMQSLLQQITENPQLMQ
NMLSAPYMRSMMQSLSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNPDT
LSAMSNPRAMQALLQIQQGLQTLATEAPGLIPGFTPGLGALGSTGGSSGTNGSNATPS
ENTSPTAGTTEPGHQQFIQQMLQALAGVNPQLQNPEVRFQQQLEQLSAMGFLNREANL
QALIATGGDINAAIERLLGSQPS"
BASE COUNT 1135 a 825 c 845 g 1080 t
ORIGIN
1 ggtggctgct gcggatgtcg gtgtgagcga gcggcgcctg aacacacggc ggctgccgag
61 cgcctgaccc gggcctgcgc cagagcctgc accgagctcc ggggccccac acccgctacg
121 gtggccctgc gcccgttgct actgaggcgg cgtgctctgc attcttcgct gtccaggcct
181 gccggctctg gtgtctgctg gctcctcctt gctcgcctgc tccctcctgc ttgcctgagt
241 caccgccgcc gccgccgcca cagccatggc cgagagtggt gaaagcggcg gtcctccggg
301 ctcccaggat agcgccgccg gagccgaagg tgctggcacc cccgcggccg ctgcctccgc
361 ggagcccaaa atcatgaaag tcaccgtgaa gaccccgaag gaaaaggagg aattcgccgt
421 gcccgagaat agctccgtcc agcagtttaa ggaagaaatc tctaaacgtt ttaaatcaca
481 tactgaccaa cttgtgttga tatttgctgg aaaaattttg aaagatcaag ataccttgag
541 tcagcatgga attcatgatg gacttactgt tcaccttgtc attaaaacac aaaacaggcc
601 tcaggatcat tcagctcagc aaacaaatac agctggaagc aatgttacta catcatcaac
661 tcctaatagt aactctacat ctggttctgc tactagcaac ccttttggtt taggtggcct
721 tgggggactt gcaggtctga gtagcttggg tttgaatact accaacttct ctgaactaca
781 gagtcagatg cagcgacaac ttttgtctaa ccctgaaatg atggtccaga tcatggaaaa
841 tccctttgtt cagagcatgc tctcaaatca tgacctgatg agacagttaa ttatggccaa
901 tccacaaatg cagcagttga tacagagaaa tccagaaatt agtcatatgt tgaataatcc
961 agatataatg agacaaacgt tggaacttgc caggaatcca gcaatgatgc aggagatgat
1021 gaggaaccag gaccgagctt tgagcaacct agaaagcatc ccagggggat ataatgcttt
1081 aaggcgcatg tacacagata ttcaggaacc aatgctgagt gctgcacaag agcagtttgg
1141 tggtaatcca tttgcttcct tggtgagcaa tacatcctct ggtgaaggta gtcaaccttc
1201 ccgtacagaa aatagagatc cactacccaa tccatgggct ccacagactt cccagagttc
1261 atcagcttcc agcggcactg ccagcactgt gggtggcact actggtagta ctgccagtgg
1321 cacttctggg cagagtacta ctgcgccaaa tttggtgcct ggagtaggag ctagtatgtt
1381 caacacacca ggaatgcaga gcttgttgca acaaataact gaaaacccac aactgatgca
1441 aaacatgttg tctgccccct acatgagaag catgatgcag tcactgagcc agaatcctga
1501 ccttgctgca cagatgatgc tgaataatcc cctatttgct ggaaatcctc agcttcaaga
1561 acaaatgaga caacagctcc caactttcct ccaacaaatg cagaatcctg atacactatc
1621 agcaatgtca aaccctagag caatgcaggc cttgttacag attcagcagg gtttacagac
1681 attagcaacg gaagccccgg gcctcatccc agggtttact cctggcttgg gggcattagg
1741 aagcactgga ggctcttcgg gaactaatgg atctaacgcc acacctagtg aaaacacaag
1801 tcccacagca ggaaccactg aacctggaca tcagcagttt attcagcaga tgctgcaggc
1861 tcttgctgga gtaaatcctc agctacagaa tccagaagtc agatttcagc aacaactgga
1921 acaactcagt gcaatgggat ttttgaaccg tgaagcaaac ttgcaagctc taatagcaac
1981 aggaggtgat atcaatgcag ctattgaaag gttactgggc tcccagccat catagcagca
2041 tttctgtatc ttgaaaaaat gtaatttatt tttgataacg gctcttaaac tttaaaatac
2101 ctgctttatt tcattttgac tcttggaatt ctgtgctgtt ataaacaaac ccaatatgat
2161 gcattttaag gtggagtaca gtaagatgtg tgggtttttc tgtatttttc ttttctggaa
2221 cagtgggaat taaggctact gcatgcatca cttctgcatt tattgtaatt ttttaaaaac
2281 atcacctttt atagttgggt gaccagattt tgtcctgcat ctgtccagtt tatttgcttt
2341 ttaaacatta gcctatggta gtaatttatg tagaataaaa gcattaaaaa gaagcaaatc
2401 atttgcactc tataatttgt ggtacagtat tgcttattgt gactttggca tgcatttttg
2461 caaacaatgc tgtaagattt atactactga taattttgtt ttatttgtat acaatataga
2521 gtatgcacat ttgggactgc atttctggaa acatactgca ataggctctc tgagcaaaac
2581 acctgtaact aaaaaagtga agataagaaa atactcttaa agctgagtat ttcctaattg
2641 tatagaatct tacagcatct ttgacaaaca tctcccagca aaagtgccgg ttagtcaggt
2701 ttgttgaaaa tacagtagaa aagctgattc tggttatctc tttaaggaca attaattgta
2761 cagacacata atgtaacatt gtctcaacat tcattcacag attgactgta aattacctta
2821 atctttgtgc agactgaagg aacactgtag tataccccaa agtgcatttg cctaggactt
2881 ctcagcttct cccataggta gtttaacagg cattaaaatt tgtaattgaa atgttgcttt
2941 cactgaaaaa gtgtcttgat gtttcagtta tttttaatcg ccataaaaaa atagaactat
3001 cttttgggtt tatctgtttt ctcatgcaca ggcaatacac aaatttaaaa tgagttgtga
3061 gccaattgtt tctgaagtgt tttggtagtt ctattaagaa atagttaaat attgtgcttt
3121 tcagagcctc agagaaaggg ggacggggtg ggggggtggg gcagcggaat ctgtcctgga
3181 tggggccagc ttaaataata ctggcaacca agattctgtt aggatttctg tgcatatagt
3241 gtagtaaaga agtatcattc aggggtgaaa aacaaagagc cgttttaatg atgttgagta
3301 catttggctg ttttatagcc tttttcttcc ctcccccaaa gaattctgtt tgcctaactc
3361 ccaaactgtt ggggtggtac attcctttag gaccaattaa aacataattg agggtcagtg
3421 atacatttgg ctgactctgg ttcagtattc tcttaggtga ttatattctc tcatgtacag
3481 ttacaggaaa ttaaaatgtt aaagtaacct aaaatgaatt cagaccaata aaatcaaggg
3541 aaatacaagt tgattgcatt acttctgtat gttgcttgct attaaaaagg ttaagaggcc
3601 aggttaccca ccagtccttg cactgttctg acactttccc caggaggaaa acaagtacaa
3661 aggttacggt ggaggcataa gtagaagaga ttgttaagaa gggtattcat gtgtctttgc
3721 tctttctgct ttatgcctca gtttggttta aaaacttctg tactggcaaa tggtggtatt
3781 cagtgtggga tagtgtcata actaatttga caatttatta atcataaaat aacaataaat
3841 ctctagcttt tacacttgaa aaaaaaaaga aaaaaaaaaa aaaaa
//