LOCUS BC039269 3760 bp mRNA linear HUM 16-DEC-2006 DEFINITION Homo sapiens NLR family, pyrin domain containing 2, mRNA (cDNA clone MGC:33950 IMAGE:5298283), complete cds. ACCESSION BC039269 VERSION BC039269.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3760) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3760) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 48 Row: m Column: 24 This clone was selected for full length sequencing because it passed the following selection criteria: Similarity but not identity to protein. FEATURES Location/Qualifiers source 1..3760 /db_xref="H-InvDB:HIT000052186" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:33950 IMAGE:5298283" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3760 /gene="NLRP2" /gene_synonym="CLR19.9" /gene_synonym="FLJ20510" /gene_synonym="NBS1" /gene_synonym="PAN1" /gene_synonym="PYPAF2" /db_xref="GeneID:55655" /db_xref="HGNC:HGNC:22948" /db_xref="MIM:609364" CDS 112..2652 /gene="NLRP2" /gene_synonym="CLR19.9" /gene_synonym="FLJ20510" /gene_synonym="NBS1" /gene_synonym="PAN1" /gene_synonym="PYPAF2" /codon_start=1 /product="NLRP2 protein" /protein_id="AAH39269.1" /db_xref="GeneID:55655" /db_xref="HGNC:HGNC:22948" /db_xref="MIM:609364" /translation="MVSSAQMGFNLQALLEQLSQDELSKFKYLITTFSLAHELQKIPH KEVDKADGKQLVEVLTTHCDSYWVEMASLQVFEKMHRMDLSERAKDEVREAALKSFNK RKPLSLGITRKERPPLDVDEMLERFKTEAQAFTETKGNVICLGKEVFKGKKPDKDNRC RYILKTKFREMWKSWPGDSKEVQVMAERYKMLIPFSNPRVLPGPFSYTVVLYGPAGLG KTTLAQKLMLDWAEDNLIHKFKYAFYLSCRELSRLGPCSFAELVFRDWPELQDDIPHI LAQARKILFVIDGFDELGAAPGALIEDICGDWEKKKPVPVLLGSLLNRVMLPKAALLV TTRPRALRDLRILAEEPIYIRVEGFLEEDRRAYFLRHFGDEDQAMRAFELMRSNAALF QLGSAPAVCWIVCTTLKLQMEKGEDPVPTCLTRTGLFLRFLCSRFPQGAQLRGALRTL SLLAAQGLWAQTSVLHREDLERLGVQESDLRLFLDGDILRQDRVSKGCYSFIHLSFQQ FLTALFYTLEKEEEEDRDGHTWDIGDVQKLLSGVERLRNPDLIQAGYYSFGLANEKRA KELEATFGCRMSPDIKQELLRCDISCKGGHSTVTDLQELLGCLYESQEEELVKEVMAQ FKEISLHLNAVDVVPSSFCVKHCRNLQKMSLQVIKENLPENVTASESDAEVERSQDDQ HMLPFWTDLCSIFGSNKDLMGLAINDSFLSASLVRILCEQIASDTCHLQRVVFKNISP ADAHRNLCLALRGHKTVTYLTLQGNDQDDMFPALCEVLRHPECNLRYLGLVSCSATTQ QWADLSLALEVNQSLTCVNLSDNELLDEGAKLLYTTLRHPKCFLQRLS" BASE COUNT 926 a 942 c 1028 g 864 t ORIGIN 1 tatcacaggg ctgcggccga gaaagaagcc ttattagagc tttctcaacc tgcagccctc 61 atctccgccg gcgagtaggg ccaggtgttg ggagctccca cgtgggacaa gatggtgtct 121 tcggcgcaga tgggcttcaa cctgcaggct ctcctggagc agctcagcca ggatgagttg 181 agcaagttca agtatctgat cacgaccttc tccctggcac acgagctcca gaagatcccc 241 cacaaggagg tagacaaggc tgatgggaag caactggtag aagtcctcac cacccattgt 301 gacagctact gggtggagat ggcgagcctt caggtctttg aaaagatgca ccgaatggat 361 ctgtctgaga gagcaaagga tgaagtcaga gaagcagctt tgaaatcctt taataaaagg 421 aaacctctat cattagggat aacacggaaa gaacgaccac ctctagacgt ggacgaaatg 481 ctggagcgct tcaaaacaga agcacaagcg tttacagaaa cgaaaggaaa tgtcatctgc 541 ctgggtaaag aagtctttaa aggaaaaaag ccagacaaag acaataggtg caggtatata 601 ttgaagacga agttccggga gatgtggaag agctggcctg gagatagcaa agaggtccag 661 gttatggctg agagatacaa gatgctgatc ccattcagca accccagggt gcttcccggg 721 cccttctcat acacggtggt gctgtatggt cctgcaggcc ttgggaaaac cacgctggcc 781 cagaaactaa tgctagactg ggcagaggac aacctcatcc acaaattcaa atatgcgttc 841 tacctcagct gcagggagct cagccgcctg ggcccgtgca gttttgcaga gctggtcttc 901 agggactggc ctgaattgca ggatgacatt ccacacatcc tagcccaagc acggaaaatc 961 ttgttcgtga ttgacggctt tgatgagctg ggagccgcac ctggggcgct gatcgaggac 1021 atctgcgggg actgggagaa gaagaagccg gtgcccgtcc tcctggggag tttgctgaac 1081 agggtgatgt tacccaaggc cgccctgctg gtcaccacgc ggcccagggc cctgagggac 1141 ctccggatcc tggcggagga gccgatctac ataagggtgg agggcttcct ggaggaggac 1201 aggagggcct atttcctgag acactttgga gacgaggacc aagccatgcg tgcctttgag 1261 ctaatgagga gcaacgcggc cctgttccag ctgggctcgg cccccgcggt gtgctggatc 1321 gtgtgcacga ctctgaagct gcagatggag aagggggagg acccggtccc cacctgcctc 1381 acccgcacgg ggctgttcct gcgtttcctc tgcagccggt tcccgcaggg cgcacagctg 1441 cggggcgcgc tgcggacgct gagcctcctg gccgcgcagg gcctgtgggc gcagacgtcc 1501 gtgcttcacc gagaggatct ggaaaggctc ggggtgcagg agtccgacct ccgtctgttc 1561 ctggacggag acatcctccg ccaggacaga gtctccaaag gctgctactc cttcatccac 1621 ctcagcttcc agcagtttct cactgccctg ttctacaccc tggagaagga ggaggaagag 1681 gatagggacg gccacacctg ggacattggg gacgtacaga agctgctttc cggagtagaa 1741 agactcagga accccgacct gatccaagca ggctactact cctttggcct cgctaacgag 1801 aagagagcca aggagttgga ggccactttt ggctgccgga tgtcaccgga catcaaacag 1861 gaattgctgc gatgcgacat aagttgtaag ggtggacatt caacggtgac agacctgcag 1921 gagctcctcg gctgtctgta cgagtctcag gaggaggagc tggtgaagga ggtgatggct 1981 cagttcaaag aaatatccct gcacttaaat gcagtagacg ttgtgccatc ttcattctgc 2041 gtcaagcact gtcgaaacct gcagaaaatg tcactgcagg taataaagga gaatctcccg 2101 gagaatgtca ctgcgtctga atcagacgcc gaggttgaga gatcccagga tgatcagcac 2161 atgcttcctt tctggacgga cctttgttcc atatttggat caaataagga tctgatgggt 2221 ctagcaatca atgatagctt tctcagtgcc tccctagtaa ggatcctgtg tgaacaaata 2281 gcctctgaca cctgtcatct ccagagagtg gtgttcaaaa acatttcccc agctgatgct 2341 catcggaacc tctgcctagc tcttcgaggt cacaagactg taacgtatct gacccttcaa 2401 ggcaatgacc aggatgatat gtttcccgca ttgtgtgagg tcttgagaca tccagaatgt 2461 aacctgcgat atctcgggtt ggtgtcttgt tccgctacca ctcagcagtg ggctgatctc 2521 tccttggccc ttgaagtcaa ccagtccctg acgtgcgtaa acctctccga caatgagctt 2581 ctggatgagg gtgctaagtt gctgtacaca actttgagac accccaagtg ctttctgcag 2641 aggttgtcgt aagtctctcc tctcttacag agcagctgtg ctttcgatct ggggccacag 2701 acgagcaatg gtcatgcctg acttggctgt atggaacctc tcgctgatgt gaacacctgt 2761 tcccatgttt agatccaggc cgatggcctg tgaattttgt tcttctctca ttcctattcc 2821 ttcataggat caccagtgca tgatagaagg ttggaaaact gtcaccttac agaagccaat 2881 tgcaaggacc ttgctgctgt gttggttgtc agccgggagc tgacacacct gtgcttggcc 2941 aagaacccca ttgggaatac aggggtgaag tttctgtgtg agggcttgag gtaccccgag 3001 tgtaaactgc agaccttggt gctttggaac tgcgacataa ctagcgatgg ctgctgcgat 3061 ctcacaaagc ttctccaaga aaaatcaagc ctgttgtgtt tggatctggg gctgaatcgc 3121 ataggagtta agggaatgaa gttcctgtgt gaggctttga ggaaaccact gtgcaacttg 3181 agatgtctgt ggttgtgggg atgttccatc cctccgttca gttgtgaaga cctctgctct 3241 gccctcagct gcaaccagag cctcgtcact ctggacctgg gtcagaatcc cttggggtct 3301 agtggagtga agatgctgtt tgaaaccttg acatgttcca gtggcaccct ccggacactc 3361 aggttgaaaa tagatgactt taatgatgaa ctcaataagc tgctggaaga aatagaagaa 3421 aaaaacccac aactgattat tgatactgag aaacatcatc cctgggcaga aaggccttct 3481 tctcatgact tcatgatctg aatccccccg agtcattcat tctccatgaa gtcatcgatt 3541 ttccaggtgt tggtgaactg cctgtgactc ctctcctccc cggcccctac ccctcaggga 3601 taatgagttc attgctgggc tagatgtttt agccatgatt ctgcctctgt tttatacctg 3661 cacacatcct tatctttgtt acatatgaaa tatctgtatc acgggtatat tgagagaaat 3721 aaaggtgaga gcattcacaa aagaaaaaaa aaaaaaaaaa //