LOCUS BC039256 4252 bp mRNA linear HUM 23-JUL-2007
DEFINITION Homo sapiens PDS5, regulator of cohesion maintenance, homolog B (S.
cerevisiae), mRNA (cDNA clone IMAGE:5295109), complete cds.
ACCESSION BC039256
VERSION BC039256.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4252)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4252)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 48 Row: k Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7705287
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..4252
/db_xref="H-InvDB:HIT000052175"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5295109"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4252
/gene="PDS5B"
/gene_synonym="AS3"
/gene_synonym="CG008"
/gene_synonym="RP1-267P19.1"
/db_xref="GeneID:23047"
/db_xref="HGNC:HGNC:20418"
/db_xref="MIM:605333"
CDS 71..1660
/gene="PDS5B"
/gene_synonym="AS3"
/gene_synonym="CG008"
/gene_synonym="RP1-267P19.1"
/codon_start=1
/product="PDS5B protein"
/protein_id="AAH39256.1"
/db_xref="GeneID:23047"
/db_xref="HGNC:HGNC:20418"
/db_xref="MIM:605333"
/translation="MAHSKTRTNDGKITYPPGVKEISDKISKEEMVRRLKMVVKTFMD
MDQDSEEEKELYLNLALHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDK
LKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRT
LFSVINNGHNQKVHMHMVDLMSSIICEGDTVSQELLDTVLVNLVPAHKNLNKQAYDLA
KALLKRTAQAIEPYITNFFNQVLMLGKTSISDLSEHVFDLILELYNIDSHLLLSVLPQ
LEFKLKSNDNEERLQVVKLLAKMFGAKDSELASQNKPLWQCYLGRFNDINVPIRLECV
KFASHCLMNHPDLAKDLTEYLKVRSHDPEEAIRHDVIVSIVTAAKKDILLVNDHLLNF
VRERTLDKRWRVRKEAMMGLAQIYKKYALQSAAGKDAAKQIAWIKDKLLHIYYQNSID
DRLLVERIFAQYMVPHNLETTERMKCLYYLYATLDLNAVKYVSNIKFCSFHPLQYIGF
YGKETTNTCILKCNLCSVNIV"
BASE COUNT 1407 a 664 c 792 g 1389 t
ORIGIN
1 ggattccgga gagccccgga gtgagcggag tagcgagtcg gcaacccgga ggggtagaaa
61 tatttctgtc atggctcatt caaagactag gaccaatgat ggaaaaatta catatccgcc
121 tggggtcaag gaaatatcag ataaaatatc taaagaggag atggtgagac gattaaagat
181 ggttgtgaaa acttttatgg atatggacca ggactctgaa gaagaaaagg agctttattt
241 aaacctagct ttacatcttg cttcagattt ttttctcaag catcctgata aagatgttcg
301 cttactggta gcctgctgcc ttgctgatat tttcaggatt tatgctcctg aagctcctta
361 cacatcccct gataaactaa aggatatatt tatgtttata acaagacagt tgaaggggct
421 agaggataca aagagcccac aattcaatag gtatttttat ttacttgaga acattgcttg
481 ggtcaagtca tataacatat gctttgagtt agaagatagc aatgaaattt tcacccagct
541 atacagaacc ttattttcag ttataaacaa tggccacaat cagaaagtcc atatgcacat
601 ggtagacctt atgagctcta ttatttgtga aggtgataca gtgtctcagg agcttttgga
661 tacggtttta gtaaatctgg tacctgctca taagaattta aacaagcaag catatgattt
721 ggcaaaggct ttactgaaga ggacagctca agctattgag ccatatatta ccaatttttt
781 taatcaggtt ctgatgcttg ggaaaacatc tatcagcgat ttgtcagagc atgtctttga
841 cttaattttg gagctctaca atattgatag tcatttgctg ctctctgttt taccccagct
901 tgaatttaaa ttaaagagca atgataatga ggagcgccta caagttgtta aactactggc
961 aaaaatgttt ggggcaaagg attcagaatt ggcttctcaa aacaagccac tttggcagtg
1021 ctacttgggc aggtttaatg atatcaatgt accaatccgc ctggaatgtg tgaaatttgc
1081 tagccattgt ctcatgaacc atcctgattt agcaaaagac ttaacagagt atcttaaagt
1141 gaggtcacat gaccctgagg aagctattag acatgatgtt attgtgtcaa tagttacagc
1201 tgctaaaaag gatattcttc tggtcaatga tcacttactt aattttgtga gagagagaac
1261 attagacaaa cgatggagag tacgcaaaga agccatgatg ggacttgccc aaatttataa
1321 gaaatatgct ttacagtcag cagctggaaa agatgctgca aaacagatag catggatcaa
1381 agacaaattg ctacatatat attatcaaaa tagtattgat gatcgactac ttgttgaacg
1441 gatctttgct caatacatgg ttcctcacaa tttagaaact acagaacgga tgaaatgctt
1501 atattacttg tatgccacac tggatttaaa tgctgtgaag tatgtttcaa atatcaaatt
1561 ctgttctttt catcctttgc aatatattgg attttatgga aaagaaacta caaacacctg
1621 tattttaaaa tgtaatctat gtagtgtaaa cattgtttaa agggttatgt cgtagtactt
1681 ggctattttt tcagaaagta ccactttaaa catgagacta agccattaca agcaattgaa
1741 aaatagagct gattgacatg aaatctttta ggatttgagt tttctattca tattgttggt
1801 gtctcaagaa acgttgatgt acctattctt ttttatttgt tttccttaag gcattagaaa
1861 cattcatatt atgaaaatac taccttttta ttctcacttg gtgtactgat gtgcattacg
1921 gtggagagca gtaggctgca gattttgtgc tgcatagcct gagcagcacc gtgttatagt
1981 ttgacataag agtaagcaca aatatatttt tattaccgca tgtcattcag aaagtacttt
2041 tgggtgttta ggtaaggtgg cattggtgtg ttagacatgg aaaagacatt gctagtctaa
2101 ttgaatcata ctaagggtta ggaaattgaa gtcttagaga tttgctttag gttttaggaa
2161 atgtagaccc ttagtattcc agcaaatgta gtttacaaat attaagggtt aaatgttgag
2221 aaatttgaga gatctaaggg gctgtatgta attttcattt gtaccactgt ttaatgagac
2281 ttttaacttc atttcttcca tggaaataat tatattttct gtttatgttt tatacagaaa
2341 tagtgaggac aaggttgtag aggggagaaa tacacatttt ttttcctacc tgctgtattt
2401 caggcactgg aatttgtatt atgtataact gcttttgtgc tacagtggaa aagtaggttg
2461 cagagagatc tgattgccca caaagcttaa aatatttact gtccggcctt ttacagaaaa
2521 agcttggcaa ccctggttta agtgacattt ttcctgtttt acatatgatg aaataaatca
2581 cacaaatgtt aagttccaca gaatcacaca aggaataaga gggagccagg attcgcactc
2641 aatcctgctt ggttccaaag cttgttcttt ttccactaca cgtagtaaaa tacattactc
2701 tcatatttac ttttattact tgtaaacttt tctctggaat tgaaatacat cctaaaattg
2761 ttggtttgtc atagcctaat tggtggctct ttttctcatg gcaaaattaa ttgatggcct
2821 cttaaattgg atgaaatatg gtatttatat catatttgaa actacctatt ggaaatcata
2881 gtaaatctag acttctctac tcagcccaac tgtcattcaa gagtaaaaat gaaatgtcac
2941 ttttaagcaa aaatgaagaa tttgccagtc ctacttgaaa aaattactaa agaataacct
3001 tattttggta agaaaggaaa ttaaatctat aaagaagtaa taagattcaa gaatttgaaa
3061 cacttctata aatataaata ataaaggact gtaaaaacag taataataca gttttatttg
3121 caaggggtgg gagtgtggat taaaaagtag gtagcatgta ggccaatatt tagccagtac
3181 catacaccac tgcagtacta tgtgagattt cctgagtgtc cctggaatcc tccttcctat
3241 ggtcctacca tgcctgggca gggctggaat gtctccagga ccttcttgca ctgcccatga
3301 ttctgactgg ttgatgcctg atgcctttgt gaaaaatttt gactgcaggt gggtcctatc
3361 agataacagc atgtaaggta ataggtaagt aatgagtatg aaggtgttcc aaggttcttt
3421 tgtcatgtta gtgagggcag acatcttgac taactatgtt ataagtgggc atttaacagt
3481 cacctctgaa agcagttaaa atgtatagct tccaaacaca gaggaacaaa aaataattaa
3541 tgaaaacttt aataccagaa acaaaataga aagcaagaaa aataacaata aatacacaaa
3601 gtatagttgt tataaaacta aacatgtcag atatcactta tcacttaaat gataagtata
3661 tttgattgaa ttcaaaagtg agacagtgcc attcacaaga gatatattga aaaataatgc
3721 cattgaaaag ttaaaagtaa attccaatct ggaccagtac tcaaaaggaa aggctttgat
3781 tctacaaaaa tggttggtga atgaatggat atttatttgt tttaagataa aatatttagg
3841 gtacatatat atcatttttt agatgatttt cattttaacc agctttttat aattagctga
3901 ccaactatta tacttaccag tattttagta ctttatattt atctgtggtt gttttctcca
3961 aaatccatta cctttttaat tatgtaataa taaagaaatc acgtatatat gttatgaagc
4021 atagtaataa agtaaaaata cctatgaatc tattacccaa cttgtaaact tttctcccat
4081 tcatcttcct cccagaggta acctctaccc ttgtttcttg tttcctttaa aaattttttt
4141 taacatatac atgtatatgt atgtgtatat atgtgtatcc ctcagtaata tatttttgct
4201 tgtttttgaa ctttatgaaa gaaacaattg tgtatacaaa aaaaaaaaaa aa
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