LOCUS BC039255 4327 bp mRNA linear HUM 30-JUL-2005
DEFINITION Homo sapiens contactin 5, mRNA (cDNA clone MGC:33755
IMAGE:5273769), complete cds.
ACCESSION BC039255
VERSION BC039255.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4327)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4327)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 48 Row: f Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 28373128.
FEATURES Location/Qualifiers
source 1..4327
/db_xref="H-InvDB:HIT000095567"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33755 IMAGE:5273769"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4327
/gene="CNTN5"
/gene_synonym="HNB-2s"
/gene_synonym="NB-2"
/db_xref="GeneID:53942"
/db_xref="MIM:607219"
CDS 1222..3075
/gene="CNTN5"
/gene_synonym="HNB-2s"
/gene_synonym="NB-2"
/codon_start=1
/product="CNTN5 protein"
/protein_id="AAH39255.1"
/db_xref="GeneID:53942"
/db_xref="MIM:607219"
/translation="MGEYEPKIEVHFPFTVTAAKGTTVKMECFALGNPVPTITWMKVN
GYIPSKARLRKSQAVLEIPNVQLDDAGIYECRAENSRGKNSFRGQLQVYTYPHWVEKL
NDTQLDSGSPLRWECKATGKPRPTYRWLKNGVPLSPQSRVEMVNGVLMIHNVNQSDAG
MYQCLAENKYGAIYASAELKILASAPTFALNQLKKTIIVTKDQEVVIECKPQGSPKPT
ISWKKGDRAVRENKRIAILPDGSLRILNASKSDEGKYVCRGENVFGSAEIIASLSVKE
PTRIELTPKRTELTVGESIVLNCKAIHDASLDVTFYWTLKGQPIDFEEEGGHFESIRA
QASSADLMIRNILLMHAGRYGCRVQTTADSVSDEAELLVRGPPGPPGIVIVEEITEST
ATLSWSPAADNHSPISSYNLQARSPFSLGWQTVKTVPEIITGDMESAMAVDLNPWVEY
EFRVVATNPIGTGDPSTPSRMIRTNEAVPKTAPTNVSGRSGRRHELVIAWEPVSEEFQ
NGEGFGYIVAFRPNGTRGWKEKMVTSSEASKFIYRDESVPPLTPFEVKVGVYNNKGDG
PFSQIVVICSAEGEPSAAPTDVKATSVSVSEILVAWKHIKESLGRPQGFEV"
BASE COUNT 1327 a 838 c 923 g 1239 t
ORIGIN
1 aattcgcctc tgccacaggc tgcaaaggac ccgaggaacc gctctctctg aactgtgctg
61 atgggcagga ggatgggaga caggaattga gagtcacaga ggaaggacag tggagtctgg
121 catcttattg gtgtctttaa aggattgcca tttaatgcca ttcaagatct actaagcatc
181 atttttgcat gactactgca aaaggattac tttacagata ccagttcctt tgtcaagagc
241 atactttgga ccctgttttc agaaagcagg gcactcttta atgaagaaac accagagctg
301 ttaaacacat tgagacacag aagattctag tgactgagga tggcttcctc ttggaaacta
361 atgctgtttc tgtcagtcac aatgtgtctt tcagagtatt caaaatctct tcctggtctc
421 tccacttcat atgctgcttt gttaagaatt aagaagagtt catcttcatc tctctttggt
481 tccaaaacca gaccacgata cagcagccct tcattaggaa cactgagtgc ttcttcaccc
541 agctggctag gggcagctca gaattattat tcccccatca atctttatca ttcctcagat
601 gccttcaaac aagatgaaag tgtggactat gggccagttt ttgtgcaaga accagatgat
661 attatttttc caactgattc tgatgaaaag aaggtagcat tgaattgtga agttcgtggc
721 aatccagttc ccagttacag atggcttcga aatggaacag aaatagatct ggaaagtgat
781 tatcgctaca gtttgataga tggcaccttc attataagca atccaagtga agcaaaggat
841 tctggtcatt atcagtgttt agcaaccaac actgtgggga gtattcttag tagagaagct
901 acactgcagt ttgcctatct gggaaatttt agtggccgga caagaagtgc agtctctgtg
961 agggaaggcc agggtgtcgt tctgatgtgc tctcctccgc cacattgacc agagatcatc
1021 tatagctggg tatttaatga gttcccttcc tttgtggcgg aagacagccg gcggttcatc
1081 tcccaggaga caggcaacct ttatatttct aaagtccaaa catcagatgt tggcagctat
1141 atttgtctgg tgaaaaacac agtgacgaat gctagagtcc ttagtcctcc aacgccactc
1201 actctgcgta atgatggtgt gatgggagaa tatgagccga aaattgaggt ccattttcct
1261 ttcacggtta cagctgctaa aggaacaact gttaagatgg aatgctttgc acttggcaac
1321 cccgttccaa caatcacatg gatgaaggtt aatggttata ttcctagtaa ggcacgtctg
1381 cggaaatctc aggcggtgct ggaaataccg aatgtacagc tggatgatgc aggcatttat
1441 gagtgcagag ctgaaaactc acgtggaaaa aattcctttc gtggacaatt acaagtatac
1501 acctacccac actgggtaga aaaactgaat gatactcagt tagacagtgg gagccctctc
1561 cgatgggaat gtaaggctac tggaaaaccc agacccacgt atcgttggct gaagaatgga
1621 gtacccctct cacctcagag tagggttgag atggttaatg gagtattgat gatccacaat
1681 gtgaatcaat cagatgctgg aatgtatcag tgtttggctg aaaataagta tggagccatt
1741 tacgctagtg ctgagctgaa gattctagct tcagctccca cttttgcact gaatcaactg
1801 aagaaaacaa taattgttac caaagaccaa gaagttgtca tagagtgcaa accccaaggc
1861 tctccaaaac caaccatctc ttggaagaaa ggagacagag cagttagaga aaacaaaaga
1921 atagctattc ttccagacgg gagtctacgg atcctaaatg cttccaaatc agacgaggga
1981 aagtacgttt gccgagggga aaacgtcttt ggttctgctg aaattatagc ttcgctatct
2041 gtaaaagaac ctacaaggat agaacttact cctaaaagaa cagaattgac agtgggagaa
2101 agcattgtcc ttaattgcaa agcaattcac gatgctagtt tggatgtcac tttctactgg
2161 actctgaaag gacagcctat tgatttcgag gaagagggtg gacattttga aagcatcagg
2221 gcccaagcat cctctgcaga tttaatgatc aggaacatcc ttctgatgca tgctgggaga
2281 tatggctgca gggtacagac cacagcagac agtgtgtcag atgaggcaga acttcttgtt
2341 aggggacccc caggcccacc tgggatagta attgttgagg aaataaccga aagtacggcc
2401 acactgtcct ggagcccagc agctgacaac cacagcccaa tctcctccta caaccttcaa
2461 gctcgcagcc cattttccct gggctggcaa acagtaaaga cagtcccaga aatcataaca
2521 ggggacatgg agtcagccat ggctgtggac ctaaatccct gggtggaata tgaatttcga
2581 gtggtagcca ccaaccctat tgggacagga gatccaagca ccccatctcg aatgatccgc
2641 acaaatgaag cagttccgaa gacagcaccc accaatgtaa gcggaagaag tggaagaagg
2701 catgagttag tcattgcctg ggagccagta tctgaagagt ttcagaatgg ggaaggcttc
2761 ggctatattg tggctttcag acccaatgga acacgtggct ggaaggaaaa aatggtgaca
2821 tcctctgaag cttccaaatt catttatcga gatgaaagtg tccctcctct tactcccttt
2881 gaagtgaaag ttggcgttta taacaataaa ggagatgggc cttttagtca aattgtggtc
2941 atctgttcag ctgaaggaga acccagtgct gctcccacag atgtcaaggc gacaagtgtg
3001 tctgtgtcag agattcttgt tgcatggaaa cacattaaag agagtctagg aagaccacag
3061 ggatttgagg tatgaacaga atgattgaaa ataagcctta ttgtttcttc tgacatcaca
3121 ttctcctaaa gagaggtttt ggtgacacct cagaatttca acagaatttc ttagaaattt
3181 tgctctatgt taaagaaact aagaaatact attttactgg gatgtgttat gttgctcatt
3241 aactggttta tttttcagta cagtagcttc cgtagcacta tgcaaagatg tttttaaaag
3301 atgaaataga gttttagaca aaagcaggag ctacaggtag atatttaatt gtatccaatt
3361 tactggtcat tttaaaagtt tttgtgtctt cctttctaat aatttaatgt ataaatacaa
3421 gttttccttt tgtactttat tggtatctct taccctcagt gctgaattat caaattttgc
3481 ttggaattta atgatctgta ttgtatctat gtattcagat agtttttttg gtcccttaaa
3541 tgttgctatt tttaaacata gttattccag ccttataatg gtgaacattt catatcaaat
3601 gaataacatc aatgaaattt tagcctccgc agagaatagc agattgtgag tagtctgtga
3661 acatgaatat tttatgataa caaggtttgg cttctcacac agctcttgtt cttgttcttg
3721 ccttgcttgg ccagtcatgg agaggaatta gggggataat gtctaaaaga aaaaaagaat
3781 tagcatctga cccaagactt tagttgcatt taaaaaaatt tattcttact tttcctctgc
3841 ttcagttccc attaagagaa aatcatcttg tgtcttgaac aatgatcaag tataggactt
3901 gtatactaac atggtttcca ggctgaaaca tatttttaat tctatttgag ttttcaaata
3961 atgcccaaca attatttgat taacatacag ctggcattaa ataatgattt ctatgataaa
4021 aaaatttata caatctttct aagagttaca gcaagaacaa tttatgggaa accattacct
4081 acttatacaa tatcatggac ttatttctac aatcttgctt caattaatta tttggaatga
4141 taatttagta tctcattatg attgcatgtt taatgtgatg aatatttctg tttctcccaa
4201 tccatgcttc agggaccatg tttgttcatc attaaatctc agcaaatgat aatatatata
4261 tttggcccat aactgaccac aataaatatg ttgaatgaat aaaaaaaaaa gaaaaaaaaa
4321 aaaaaaa
//