LOCUS BC039248 3538 bp mRNA linear HUM 07-AUG-2008
DEFINITION Homo sapiens regulatory factor X, 6, mRNA (cDNA clone MGC:33442
IMAGE:5272028), complete cds.
ACCESSION BC039248
VERSION BC039248.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3538)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3538)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 48 Row: c Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 27734870.
FEATURES Location/Qualifiers
source 1..3538
/db_xref="H-InvDB:HIT000052171"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33442 IMAGE:5272028"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3538
/gene="RFX6"
/gene_synonym="dJ955L16.1"
/db_xref="GeneID:222546"
/db_xref="HGNC:HGNC:21478"
CDS 64..2850
/gene="RFX6"
/gene_synonym="dJ955L16.1"
/codon_start=1
/product="regulatory factor X, 6"
/protein_id="AAH39248.1"
/db_xref="GeneID:222546"
/db_xref="HGNC:HGNC:21478"
/translation="MAKVPKLEDTFLQAQPAPQLSPGIQEDCCVQLLGKGLLVYPEET
VYLAAEGQPGGEQGGGEKGEDPELPGAVKSEMHLNNGNFSSEEEDADNHDSKTKAADQ
YLSQKKTITQIVKDKKKQTQLTLQWLEENYIVCEGVCLPRCILYAHYLDFCRKEKLEP
ACAATFGKTIRQKFPLLTTRRLGTRGHSKYHYYGIGIKESSAYYHSVYSGKGLTRFSG
SKLKNEGGFTRKYSLSSKTGTLLPEFPSAQHLVYQGCISKDKVDTLIMMYKTHCQCIL
DNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVIIDIFCVCDSILYKVLTDVLIPAT
MQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRFVSSLKRQTSFLHL
AQIARPALFDQHVVNSMVSDIERVDLNSIGSQALLTISGSTDTESGIYTEHDSITVFQ
ELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDFLLKWSFFGARVMH
NLTLNNASSFGSFHLIRMLLDEYILLAMETQFNNDKEQELQNLLDKYMKNSDASKAAF
TASPSSCFLANRNKGSMVSSDAVKNESHVETTYLPLPSSQPGGLGPALHQFPAGNTDN
MPLTGQMELSQIAGHLMTPPISPAMASRGSVINQGPMAGRPPSVGPVLSAPSHCSTYP
EPIYPALPQANHDFYSTSSNYQTVFRAQPHSTSGLYPHHTEHGRCMAWTEQQLSRDFF
SGSCAGSPYNSRPPSSYGPSLQAQDSHNMQFLNTGSFNFLSNTGAASCQGATLPPNSP
NGYYGSNINYPESHRLGSMVNQHVSVISSIRSLPPYSDIHDPLNILDDSGRKQTSSFY
TDTSSPVACRTPVLASSLQTPIPSSSSQCMYGTSNQYPAQETLDSHGTSSREMVSSLP
PINTVFMGTAAGGT"
BASE COUNT 1070 a 818 c 741 g 909 t
ORIGIN
1 ggctggggct ccgctgggga accggccgag cggcgcgcgc ggaggtgtcc ggcggccagg
61 aggatggcca aggtcccgaa gctggaagac accttcctgc aggcgcagcc tgcgccccaa
121 ctgtccccgg ggatccagga agactgctgt gtgcagctcc tgggcaaggg cttgctagtc
181 tatccggaag aaacagtgta cctggcggcc gaagggcagc ccgggggcga gcagggcggc
241 ggggagaaag gcgaagaccc ggagctgccg ggggcagtga aatcagaaat gcacttaaac
301 aatggtaact tttcctctga agaagaggac gccgacaacc acgacagcaa aaccaaagca
361 gcggatcaat acctgtctca gaagaaaacc atcacgcaga ttgtgaagga taaaaagaag
421 cagacacagc tcacgctgca gtggcttgaa gagaattaca ttgtatgtga aggagtttgc
481 ttaccacggt gcattcttta tgcacactac ttagatttct gtaggaaaga gaaattagag
541 ccagcctgtg cggccacctt tggaaagaca attcgccaga agtttcccct cctaacaaca
601 aggcggcttg gaacaagagg ccattcaaag tatcattact atgggattgg catcaaagag
661 agcagtgcat attaccactc cgtttattct ggaaagggct tgacaaggtt ttctggaagc
721 aagctaaaga atgagggtgg cttcactcgt aaatattcgc ttagctcaaa aactggaaca
781 cttcttccag aattccccag cgctcaacac cttgtatacc aaggatgcat ttctaaggac
841 aaggttgata cgctcataat gatgtacaaa actcactgcc agtgtatcct ggacaatgca
901 attaatggaa actttgaaga gatccagcat tttttattac acttttggca aggaatgcct
961 gaccatctcc ttcccctgct cgaaaatcct gttatcattg atattttctg tgtttgtgac
1021 tcaattcttt ataaggttct tacagatgta ctcattcctg caacaatgca agaaatgcct
1081 gaaagcttat tagcagacat aagaaatttt gctaaaaatt gggaacagtg ggttgtttca
1141 tccttggaaa acttgccaga agctctaact gacaagaaaa tacctattgt gcgaagattt
1201 gtatcttctc tgaaacgaca aacatctttc ttacatcttg cccagattgc cagaccagct
1261 ctctttgacc agcatgtcgt taattctatg gtgtctgata ttgaaagggt tgatttgaac
1321 agcattggct ctcaagccct tcttaccatt tcaggcagca cagacactga atctggtatc
1381 tacactgaac atgactctat cactgtgttc caagaactga aggatctcct taagaagaat
1441 gccactgtgg aggcttttat tgaatggttg gatactgtgg tagaacagag agttattaag
1501 accagcaaac aaaatggaag gtcattaaag aagagagctc aagactttct gttaaagtgg
1561 agtttttttg gtgctcgagt aatgcataat ctcaccttga acaatgcatc cagttttggt
1621 tcttttcatt tgattcgaat gcttctcgat gaatacattc tcctggccat ggagacccag
1681 tttaataatg acaaagagca ggagttacag aatttattgg acaagtatat gaagaattca
1741 gatgcgagta aagctgcttt cactgcttct ccgagttcat gctttctggc caaccgtaat
1801 aaagggagca tggtttccag cgacgctgtg aagaatgaaa gccacgtgga gacaacctat
1861 ctccctctgc catccagtca acctggaggc ctaggccctg ctctgcacca gttccctgct
1921 gggaacacag acaacatgcc gctcacaggt caaatggagc tttcacagat tgctggtcat
1981 ctgatgacac cacccatttc tccagccatg gcaagccgag gaagtgtcat taaccaagga
2041 ccaatggcag ggaggccccc aagtgtgggc ccagtactgt cagctccatc acactgctcc
2101 acatacccag agcccattta tcccgctctc cctcaagcca atcatgactt ttatagcacc
2161 agctctaact accagactgt gtttagggca cagccccact ccacatcagg actctatcct
2221 catcacaccg agcatggtcg atgcatggct tggactgaac agcagctttc aagagacttc
2281 ttcagtggca gctgtgcggg gtctccatat aactcccggc caccgtctag ctatggccca
2341 tccctgcaag cccaggattc acacaatatg cagtttttaa atacaggaag cttcaatttc
2401 ttgagcaaca caggagctgc cagctgccaa ggagcaacac tgcctcctaa ttcaccaaat
2461 ggatactatg gaagcaacat aaactaccca gagtctcaca ggctcggatc aatggtgaat
2521 cagcacgttt ctgtcatcag cagcattcgt tcactgcccc cctacagtga catccacgat
2581 ccacttaaca ttttagatga cagtggtaga aaacagacca gctcgtttta cacagacaca
2641 tcatctccag ttgcatgtcg aactccagtc ctagcttcca gtttgcaaac cccaattcct
2701 tcttcctcat cccaatgtat gtatggaact tccaaccagt atccagctca agaaaccctg
2761 gactcccatg gaacaagcag tagagaaatg gtgtcctctt taccacctat caacactgtg
2821 ttcatgggaa cagcagctgg aggcacttaa accaccaatg tgggaggggg tgctaaaact
2881 ttaaaaaaaa tctctactgt gcaaatatca ttattcactc agacttccat aagagtaaat
2941 aaaaatgaat atgcagtggc tgacattgtt ttaaagtcac tggtactatg gacaactcca
3001 tagtgaatgg agatacttgc agagcttgtc atgcacacta agagtttaaa atgtgagctc
3061 attattaatc atagtttcaa aattatcaaa taaaaccagt gaagatctga agatgcaaac
3121 atttcaacta tgaagattta catttcactt tctaatttat taaacatctg tgtgcctttt
3181 tatctttggt ttcttttaaa aagtatattt aatgccttta caataccttt aatttattag
3241 gatctcagaa tcattgttta ctatccctta tttgacaaaa agtcaaatgt gtatgttcta
3301 cctccaacgg aaatgtttac aaggtcaaga cttaattcaa ttcagacaag accaaagttg
3361 cttgacttca attcctgtgc attagtgtga tgatttctgt cacatagcag cattccgatt
3421 ctatgtaact gaatggagat gataagtgct ttcccctctt tatttaaaaa agattaaaag
3481 gaataaaaga aataaaaaaa aaaaaaaaaa aaaaaaaaaa agaaaaaaaa aaaaaaaa
//