LOCUS BC039245 4073 bp mRNA linear HUM 08-FEB-2007 DEFINITION Homo sapiens dermatan sulfate epimerase, mRNA (cDNA clone MGC:33055 IMAGE:5272885), complete cds. ACCESSION BC039245 VERSION BC039245.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4073) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4073) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 48 Row: e Column: 6 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 7019520. FEATURES Location/Qualifiers source 1..4073 /db_xref="H-InvDB:HIT000052169_03" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:33055 IMAGE:5272885" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..4073 /gene="DSE" /gene_synonym="DSEPI" /db_xref="GeneID:29940" /db_xref="HGNC:HGNC:21144" /db_xref="MIM:605942" CDS 197..3073 /gene="DSE" /gene_synonym="DSEPI" /codon_start=1 /product="dermatan sulfate epimerase" /protein_id="AAH39245.1" /db_xref="GeneID:29940" /db_xref="HGNC:HGNC:21144" /db_xref="MIM:605942" /translation="MRTHTRGAPSVFFIYLLCFVSAYITDENPEVMIPFTNANYDSHP MLYFSRAEVAELQLRAASSHEHIAARLTEAVHTMLSSPLEYLPPWDPKDYSARWNEIF GNNLGALAMFCVLYPENIEARDMAKDYMERMAAQPSWLVKDAPWDEVPLAHSLVGFAT AYDFLYNYLSKTQQEKFLEVIANASGYMYETSYRRGWGFQYLHNHQPTNCMALLTGSL VLMNQGYLQEAYLWTKQVLTIMEKSLVLLREVTDGSLYEGVAYGSYTTRSLFQYMFLV QRHFNINHFGHPWLKQHFAFMYRTILPGFQRTVAIADSNYNWFYGPESQLVFLDKFVM RNGSGNWLADQIRRNRVVEGPGTPSKGQRWCTLHTEFLWYDGSLKSVPPPDFGTPTLH YFEDWGVVTYGSALPAEINRSFLSFKSGKLGGRAIYDIVHRNKYKDWIKGWRNFNAGH EHPDQNSFTFAPNGVPFITEALYGPKYTFFNNVLMFSPAVSKSCFSPWVGQVTEDCSS KWSKYKHDLAASCQGRVVAAEEKNGVVFIRGEGVGAYNPQLNLKNVQRNLILLHPQLL LLVDQIHLGEESPLETAASFFHNVDVPFEETVVDGVHGAFIRQRDGLYKMYWMDDTGY SEKATFASVTYPRGYPYNGTNYVNVTMHLRSPITRAAYLFIGPSIDVQSFTVHGDSQQ LDVFIATSKHAYATYLWTGEATGQSAFAQVIADRHKILFDRNSAIKSSIVPEVKDYAA IVEQNLQHFKPVFQLLEKQILSRVRNTASFRKTAERLLRFSDKRQTEEAIDRIFAISQ QQQQQSKSKKNRRAGKRYKFVDAVPDIFAQIEVNEKKIRQKAQILAQKELPIDEDEEM KDLLDFADVTYEKHKNGGLIKGRFGQARMVTTTHSRAPSLSASYTRLFLILNIAIFFV MLAMQLTYFQRAQSLHGQRCLYAVLLIDSCILLWLYSSCSQSQC" BASE COUNT 1216 a 834 c 905 g 1118 t ORIGIN 1 cggcggacga cccaccttga gatgcatcta gcgactgctc ccagcatgta ggagcagttg 61 taaaatcaca gccgtaacag tgcctgctct ccagtgtctg aaaacaaatg tttttctggt 121 cttcactttt ttgaggcagg aaggatcttt cgaagatggt ttggctgcct tggagatttg 181 gagatctgat gccacgatga ggactcacac acggggggct cccagtgtgt ttttcatata 241 tttgctttgc tttgtgtcag cctacatcac cgacgagaac ccagaagtta tgattccctt 301 caccaatgcc aactacgaca gccatcccat gctgtacttc tccagggcag aagtggcgga 361 gctgcagctc agggctgcca gctcgcacga gcacattgca gcccgcctca cggaggctgt 421 gcacacgatg ctgtccagcc ccttggaata cctccctccc tgggatccca aggactacag 481 tgcccgctgg aatgaaattt ttggaaacaa cttgggtgcc ttggcaatgt tctgtgtgct 541 gtatcctgag aacattgaag cccgagacat ggccaaagac tacatggaga ggatggcagc 601 gcagcctagt tggttggtga aagatgctcc ttgggatgag gtcccgcttg ctcactccct 661 ggttggtttt gccactgctt atgacttctt gtacaactac ctgagcaaga cacaacagga 721 gaagtttctt gaagtgattg ccaatgcctc agggtatatg tatgaaactt catacaggag 781 aggatgggga tttcaatacc tgcacaatca tcagcccacc aactgtatgg ctttgctcac 841 gggaagccta gtcctgatga atcaaggata tcttcaagaa gcctacttat ggaccaaaca 901 agttctgacc atcatggaga aatctctggt cttgctcagg gaggtgacgg atggctccct 961 ctatgaagga gttgcgtatg gcagctacac cactagatca ctcttccaat acatgtttct 1021 cgtccagagg cacttcaaca tcaaccactt tggccatccg tggcttaaac aacactttgc 1081 atttatgtat agaaccatcc tgccagggtt tcaaaggact gtggctattg cggactcaaa 1141 ttacaactgg ttttatggtc cagaaagcca attagtgttc cttgataaat ttgtcatgcg 1201 taatggcagt ggtaactggc tagctgacca aatcagaagg aaccgtgtgg tggaaggtcc 1261 aggaacacca tccaaagggc agcgctggtg cactctgcac acagaatttc tctggtatga 1321 tggcagcttg aaatcggttc ctcctccaga ctttggcacc cctacactgc attattttga 1381 agactggggt gtcgtgactt atggaagtgc actacctgca gaaatcaata gatctttcct 1441 ttccttcaag tctggaaaac tggggggacg tgcaatatat gacattgtcc acagaaacaa 1501 atacaaagat tggatcaaag gatggagaaa ttttaatgca gggcatgaac atcctgatca 1561 aaactcattt acttttgctc ccaatggtgt gcctttcatt actgaggctc tgtacgggcc 1621 aaagtacacc ttcttcaaca atgttttgat gttttcccca gctgtgtcaa agagctgctt 1681 ttctccctgg gtgggtcagg tcacagaaga ctgctcatca aaatggtcta aatacaagca 1741 tgacctggca gctagttgtc aggggagggt ggttgcagca gaggagaaaa atggggtggt 1801 tttcatccga ggagaaggtg tgggagctta taacccccag ctcaacctga agaatgttca 1861 gaggaatctc atcctcctac atccacagct gcttctcctt gtagaccaaa tacacctggg 1921 agaggagagt cccttggaga cagcagcgag cttcttccat aatgtggatg ttccttttga 1981 ggagactgtg gtagatggtg tccatggggc tttcatcagg cagagagatg gtctctataa 2041 aatgtactgg atggacgata ctggctacag cgagaaagca acctttgcct cagtgacata 2101 tcctcggggc tatccctaca acgggacaaa ctatgtgaat gtcaccatgc acctccgaag 2161 tcccatcacc agggcagctt acctcttcat agggccatct atagatgttc agagcttcac 2221 tgtccacgga gactctcagc aactggatgt gttcatagcc accagcaaac atgcctacgc 2281 cacatacctg tggacaggtg aggccacagg acagtctgcc tttgcacagg tcattgctga 2341 tcgtcacaaa attctgtttg accggaattc agccatcaag agcagcattg tccctgaggt 2401 gaaggactat gctgctattg tggaacagaa cttgcagcat tttaaaccag tgtttcagct 2461 gctggagaag cagatactgt cccgagtccg gaacacagct agctttagga agactgctga 2521 acgcctgctg agattttcag ataagagaca gactgaggag gccattgaca ggatttttgc 2581 catatcacag caacagcagc agcaaagcaa gtcaaagaaa aaccgaaggg caggcaaacg 2641 ctataaattt gtggatgctg tccctgatat ttttgcacag attgaagtca atgagaaaaa 2701 gattagacag aaagctcaga ttttggcaca gaaagaacta cccatagatg aagatgaaga 2761 aatgaaagac cttttagatt ttgcagatgt aacatacgag aaacataaaa atgggggctt 2821 gattaaaggc cggtttggac aggcacggat ggtgacaact acacacagca gggccccatc 2881 actgtctgct tcctatacca ggttgttcct gattctgaac attgctattt tctttgtcat 2941 gttggcaatg caactgactt atttccagag ggcccagagc ctacatggcc aaagatgtct 3001 ttatgcagtt cttctcatag atagctgtat tttattatgg ttgtactctt cttgttccca 3061 atcacagtgt tagcactgaa gctataaatt acctggtcat tttgtgatca caagagtcta 3121 tgcaaaaaaa aaaatttctt taccccagat tatcagattt ttttccctca gattcatttt 3181 aacaaattaa gggaagatat tttgacacaa gaaagcagga acgtggagaa attggagcag 3241 gaaaagaaat tatcaaagca atagaaatag cttggtggtc ctatggtgtt tttggaagta 3301 tttggcattg ctaattgagc agtccatata gtactacttt tagaagaaac aaaaagtctg 3361 ttttttaaag taatgttttt tcttatgaga aaaaggttta gatagaattg ggttttatta 3421 atattaattt aatgctatta gcaatttcca tatactatat tgtggaaaag actgaagaat 3481 acaattctga gaaatataaa aaaattttaa tggtatactc atgttgaaag ataaatgttg 3541 ctaagtcctg gtatgatggt gtgagcttcc ttggggaagt acttcttgag ttatgtaact 3601 aacaggatgt tttactacag atctggatgg ctattcagat aacatggcaa aaaatgatag 3661 cagaagatca ttaaaaactt aaaatatatt ttattagaaa acatttatct atgaatgaat 3721 atttccttga tgctggtctc tgcacacata tgcttggtta cttgcatgca ttcattggtt 3781 gttcaataag tgagatgatt acagataact taatactgta ttttccttat atggaaaacc 3841 gttatagacc caataacaac taaacctttc aaaagaaaat attttctatt atgaatgttg 3901 attttcatac caaagaagat ggagagtcta aaatttggat atgattctta tgttttttta 3961 atagaaaacc ttcttcaagt ttattttcct aaataaacat cataattgtg aatttaaaaa 4021 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaagaaa aaaaaaaaaa aaa //